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<td id="blast-threshold">The expectation value (E) threshold is a statistical measure of the number of expected matches in a random database. The lower the e-value, the more likely the match is to be significant. E-values between 0.1 and 10 are generally dubious, and over 10 are unlikely to have biological significance. In all cases, those matches need to be verified manually. You may need to increase the E threshold if you have a very short query sequence, to detect very weak similarities, or similarities in a short region, or if your sequence has a low complexity region and you use the "filter" option</td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>E-Thresholdi

<td id="blast-matrix">The matrix assigns a probability score for each position in an alignment. The BLOSUM matrix assigns a probability score for each position in an alignment that is based on the frequency with which that substitution is known to occur among consensus blocks within related proteins. BLOSUM62 is among the best of the available matrices for detecting weak protein similarities. The PAM set of matrices is also available. If "Auto" is set, the matrix will be selected depending on the query sequence length.</td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>Matrixi

<td id="blast-filter">Low-complexity regions (e.g. stretches of cysteine in <a href="http://www.uniprot.org/uniprot/Q03751">Q03751</a>, or hydrophobic regions in membrane proteins) tend to produce spurious, insignificant matches with sequences in the database which have the same kind of low-complexity regions, but are unrelated biologically. If "Filter low complexity regions" is selected, the query sequence will be run through the program SEG, and all amino acids in low-complexity regions will be replaced by X's. </td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>Filteringi

<td id="blast-gapped">This will allow gaps to be introduced in the sequences when the comparison is done.</td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>Gappedi

<td id="blast-numal">Limits the number of returned alignments.</td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>Hitsi

Sequence feature

Entry & position(s)A0A178DPX1[165 - 165]
Description
Feature keyBinding site
Feature identifier
        10         20         30         40         50
MATNGVRSEP TKVKILGKDS IIVDYGLWQN YIAQDLLDNI PSSTYVLITD
60 70 80 90 100
TNIGPLYIPT FERAFSAAAA SLATSPRLLT YKIAPGETSK SRNTKASVED
110 120 130 140 150
WLLAQGCVRD TVIIALGGGV IGDMIGYVAA TYMRGIKFVQ VPTTLLAMVD
160 170 180 190 200
SSIGGKTAID VPAGKNLVGA FWQPQRIYID LQFLESLPKR EVINGMAEVV
210 220 230 240 250
KTAAIWNEEE FTALEGNADT ILAAVDQKPV NGRRNFDSIA TILKRIVLGS
260 270 280 290 300
VRVKAEVVSA DEREGGLRNL LNFGHSIGHA YEAILTPQIL HGECVAIGMV
310 320 330 340 350
KEAELARYLG VLDPSAVARL TKCIASYGLP TSLADKTVRR RSANKHCPVD
360 370 380 390 400
ELIKIMAVDK KNAGAVKKIV LLSGIGRTYE KKASSVVDRD IKIALSPSIS
410 420 430 440 450
VIPSVPADLN VTCTPPGSKS ISNRVLVLAA LGTGSCRITN LLHSDDTQVM
460 470 480 490 500
LDALAKMQGA SFSWENDGKE LVVTGNGGNL KATSNELYLG NAGTAARFLT
510 520 530 540 550
SVTGLCQPVE GITSTIVTGN ARMKERPIGP LVKSLRTMGV DVEYQEKEGS
560 570 580 590 600
LPLRIQACGG FGSESFTGDI ELTANVSSQY VSSILLSAPY SKKPVTLRLV
610 620 630 640 650
GGKVISQPYI DMTIAMMASF GVQVERSAED PNTYHIPNKP YTNPSEYEVE
660 670 680 690 700
SDASSATYPL AIAAITGTTC TVPNIGSGSL QGDARFAVEV LKPMGCKVEQ
710 720 730 740 750
SKTSTTVTGP PRGQLKAVKE IDMEPMTDAF LTASVLAAVA SSNGTSTTTR
760 770 780 790 800
IYGIANQRVK ECNRIQAMED ELAKFGITCR QFDDGIEVDG RGYELDAPKE
810 820 830 840 850
GIHCYDDHRV AMSFAVLSLV APAPVLILEK DCTGKTWPGY WDSLNQIFKA
860 870 880 890 900
QLEGVELPSH GERAALKTPH KSIFVIGMRG AGKTTAGGWA SRALNRPLID
910 920 930 940 950
LDTALEEYVG MTIPELIKAK GWEGFRDEEL QLLKRTMKEK PEGHIFACGG
960 970 980 990 1000
GIVEIPEARK ILTDYHKSGG LVLLVSRDIN KVMDFLQIDK TRPAYVEDMM
1010 1020 1030 1040 1050
GVWLRRKPWY IECSNYRFHS QTSESIGMAN TQDQLARFLN TITGKTSPLK
1060 1070 1080 1090 1100
DIKKKKHSFF VCLSAPELES FAKRLPEIVV GSDAVELRID LLEDPNAPEG
1110 1120 1130 1140 1150
LPSPDFVIEQ LTILRTMTTT PVIFTLRTKS QGGKFPDDAY AEARTLYMLA
1160 1170 1180 1190 1200
LRLGCDFVDL EMTMPEDILR EVSENRGPTE IIASHHDPKG ELSWSNGSWI
1210 1220 1230 1240 1250
QYYNRALQYG TVIKLVGVAQ SIEDNYALTE FKRWATAAHP IPLIAINMGE
1260 1270 1280 1290 1300
RGKLSRILNG FLTPVSHPLL PSATAPGQLS AADICKGLAL MGEISAKQFC
1310 1320 1330 1340 1350
IFGSPVQQSP SPHLHNRLFR ETGLPHHYVL NETADATTIS DVIHAPNFGG
1360 1370 1380 1390 1400
ASVTIPLKQD VRPYLDGVGP EVEAIGALNT IVPVTSVDET TGKEVTRLIG
1410 1420 1430 1440 1450
HNTDYLGMVL ILRNAGAQGV GAGLVIGGGG TSRAAIYALR QMGYGPIYIL
1460 1470 1480 1490 1500
GRNAQKIEAL KNDFPTEYNL RVLTSPEEIA SLEAIPKVAI GTVPADRPID
1510 1520 1530 1540 1550
SAIRETLCTL FEKTKSIDGG AGRILLEMAY KPAVTALIQL AQDAGWGTVN
1560 1570 1580
GLEVLVGQGI HQFEHWTGIK PLYDIARDAV MNP
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Main funding by: National Institutes of Health

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