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<td id="blast-threshold">The expectation value (E) threshold is a statistical measure of the number of expected matches in a random database. The lower the e-value, the more likely the match is to be significant. E-values between 0.1 and 10 are generally dubious, and over 10 are unlikely to have biological significance. In all cases, those matches need to be verified manually. You may need to increase the E threshold if you have a very short query sequence, to detect very weak similarities, or similarities in a short region, or if your sequence has a low complexity region and you use the "filter" option</td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>E-Thresholdi

<td id="blast-matrix">The matrix assigns a probability score for each position in an alignment. The BLOSUM matrix assigns a probability score for each position in an alignment that is based on the frequency with which that substitution is known to occur among consensus blocks within related proteins. BLOSUM62 is among the best of the available matrices for detecting weak protein similarities. The PAM set of matrices is also available. If "Auto" is set, the matrix will be selected depending on the query sequence length.</td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>Matrixi

<td id="blast-filter">Low-complexity regions (e.g. stretches of cysteine in <a href="http://www.uniprot.org/uniprot/Q03751">Q03751</a>, or hydrophobic regions in membrane proteins) tend to produce spurious, insignificant matches with sequences in the database which have the same kind of low-complexity regions, but are unrelated biologically. If "Filter low complexity regions" is selected, the query sequence will be run through the program SEG, and all amino acids in low-complexity regions will be replaced by X's. </td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>Filteringi

<td id="blast-gapped">This will allow gaps to be introduced in the sequences when the comparison is done.</td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>Gappedi

<td id="blast-numal">Limits the number of returned alignments.</td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>Hitsi

Sequence feature

Entry & position(s)P29742[1424 - 1567]
Description
Feature keyRepeat
Feature identifier
        10         20         30         40         50
MTQPLPIRFQ EHLQLTNVGI NANSFSFSTL TMESDKFICV REKVNDTAQV
60 70 80 90 100
VIIDMNDATN PTRRPISADS AIMNPASKVI ALKAQKTLQI FNIEMKSKMK
110 120 130 140 150
AHTMNEDVVF WKWISLNTLA LVTETSVFHW SMEGDSMPQK MFDRHSSLNG
160 170 180 190 200
CQIINYRCNA SQQWLLLVGI SALPSRVAGA MQLYSVERKV SQAIEGHAAS
210 220 230 240 250
FATFKIDANK EPTTLFCFAV RTATGGKLHI IEVGAPPNGN QPFAKKAVDV
260 270 280 290 300
FFPPEAQNDF PVAMQVSAKY DTIYLITKYG YIHLYDMETA TCIYMNRISA
310 320 330 340 350
DTIFVTAPHE ASGGIIGVNR KGQVLSVTVD EEQIIPYINT VLQNPDLALR
360 370 380 390 400
MAVRNNLAGA EDLFVRKFNK LFTAGQYAEA AKVAALAPKA ILRTPQTIQR
410 420 430 440 450
FQQVQTPAGS TTPPLLQYFG ILLDQGKLNK FESLELCRPV LLQGKKQLCE
460 470 480 490 500
KWLKEEKLEC SEELGDLVKA SDLTLALSIY LRANVPNKVI QCFAETGQFQ
510 520 530 540 550
KIVLYAKKVN YTPDYVFLLR SVMRSNPEQG AGFASMLVAE EEPLADINQI
560 570 580 590 600
VDIFMEHSMV QQCTAFLLDA LKHNRPAEGA LQTRLLEMNL MSAPQVADAI
610 620 630 640 650
LGNAMFTHYD RAHIAQLCEK AGLLQRALEH YTDLYDIKRA VVHTHMLNAE
660 670 680 690 700
WLVSFFGTLS VEDSLECLKA MLTANLRQNL QICVQIATKY HEQLTNKALI
710 720 730 740 750
DLFEGFKSYD GLFYFLSSIV NFSQDPEVHF KYIQAACKTN QIKEVERICR
760 770 780 790 800
ESNCYNPERV KNFLKEAKLT DQLPLIIVCD RFDFVHDLVL YLYRNNLQKY
810 820 830 840 850
IEIYVQKVNP SRLPVVVGGL LDVDCSEDII KNLILVVKGQ FSTDELVEEV
860 870 880 890 900
EKRNRLKLLL PWLESRVHEG CVEPATHNAL AKIYIDSNNN PERYLKENQY
910 920 930 940 950
YDSRVVGRYC EKRDPHLACV AYERGLCDRE LIAVCNENSL FKSEARYLVG
960 970 980 990 1000
RRDAELWAEV LSESNPYKRQ LIDQVVQTAL SETQDPDDIS VTVKAFMTAD
1010 1020 1030 1040 1050
LPNELIELLE KIILDSSVFS DHRNLQNLLI LTAIKADRTR VMDYINRLEN
1060 1070 1080 1090 1100
YDAPDIANIA ISNQLYEEAF AIFKKFDVNT SAIQVLIDQV NNLERANEFA
1110 1120 1130 1140 1150
ERCNEPAVWS QLAKAQLQQG LVKEAIDSYI KADDPSAYVD VVDVASKVES
1160 1170 1180 1190 1200
WDDLVRYLQM ARKKARESYI ESELIYAYAR TGRLADLEEF ISGPNHADIQ
1210 1220 1230 1240 1250
KIGNRCFSDG MYDAAKLLYN NVSNFARLAI TLVYLKEFQG AVDSARKANS
1260 1270 1280 1290 1300
TRTWKEVCFA CVDAEEFRLA QMCGLHIVVH ADELEDLINY YQNRGYFDEL
1310 1320 1330 1340 1350
IALLESALGL ERAHMGMFTE LAILYSKFKP SKMREHLELF WSRVNIPKVL
1360 1370 1380 1390 1400
RAAESAHLWS ELVFLYDKYE EYDNAVLAMM AHPTEAWREG HFKDIITKVA
1410 1420 1430 1440 1450
NIELYYKAIE FYLDFKPLLL NDMLLVLAPR MDHTRAVSYF SKTGYLPLVK
1460 1470 1480 1490 1500
PYLRSVQSLN NKAINEALNG LLIDEEDYQG LRNSIDGFDN FDNIALAQKL
1510 1520 1530 1540 1550
EKHELTEFRR IAAYLYKGNN RWKQSVELCK KDKLYKDAME YAAESCKQDI
1560 1570 1580 1590 1600
AEELLGWFLE RDAYDCFAAC LYQCYDLLRP DVILELAWKH KIVDFAMPYL
1610 1620 1630 1640 1650
IQVLREYTTK VDKLELNEAQ REKEDDSTEH KNIIQMEPQL MITAGPAMGI
1660 1670
PPQYAQNYPP GAATVTAAGG RNMGYPYL
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