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<td id="blast-threshold">The expectation value (E) threshold is a statistical measure of the number of expected matches in a random database. The lower the e-value, the more likely the match is to be significant. E-values between 0.1 and 10 are generally dubious, and over 10 are unlikely to have biological significance. In all cases, those matches need to be verified manually. You may need to increase the E threshold if you have a very short query sequence, to detect very weak similarities, or similarities in a short region, or if your sequence has a low complexity region and you use the "filter" option</td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>E-Thresholdi

<td id="blast-matrix">The matrix assigns a probability score for each position in an alignment. The BLOSUM matrix assigns a probability score for each position in an alignment that is based on the frequency with which that substitution is known to occur among consensus blocks within related proteins. BLOSUM62 is among the best of the available matrices for detecting weak protein similarities. The PAM set of matrices is also available. If "Auto" is set, the matrix will be selected depending on the query sequence length.</td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>Matrixi

<td id="blast-filter">Low-complexity regions (e.g. stretches of cysteine in <a href="http://www.uniprot.org/uniprot/Q03751">Q03751</a>, or hydrophobic regions in membrane proteins) tend to produce spurious, insignificant matches with sequences in the database which have the same kind of low-complexity regions, but are unrelated biologically. If "Filter low complexity regions" is selected, the query sequence will be run through the program SEG, and all amino acids in low-complexity regions will be replaced by X's. </td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>Filteringi

<td id="blast-gapped">This will allow gaps to be introduced in the sequences when the comparison is done.</td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>Gappedi

<td id="blast-numal">Limits the number of returned alignments.</td><p><a href='/help/sequence-searches' target='_top'>More...</a></p>Hitsi

Sequence feature

Entry & position(s)Q9HDV4[1096 - 1143]
Description
Feature keyZinc finger
Feature identifier
        10         20         30         40         50
MICQLLWHEH NSMGSGREKK IRKLGDNFSL PYLKFDCDHN DKNYRASNRP
60 70 80 90 100
FGLSTGLSVQ LNASNMTDPF KFLLDNWHTI FKNGAIKLLP PEGWQIPVVL
110 120 130 140 150
DQGAFEFQSK RQCLNKGCLN YEKNYDYFKK LKAFHESRGL YFYHPPIIGN
160 170 180 190 200
RPVDFLRLRN AISKFTNSGS SLNNEILHKV IIYLRLEDTK EVRQVLTRCY
210 220 230 240 250
DRYIKPFERD SSPSFKSKRS ESSTRKIRNT RSSAQQESPI PETSAQSPVQ
260 270 280 290 300
TIQVNGSTSL KRPLIERGEQ CEYCGLDKNP ETILLCDGCE AAYHTSCLDP
310 320 330 340 350
PLTSIPKEDW YCDACKFNIS DYDPRKGFKW KLSSLKERSA EIFNTLGERN
360 370 380 390 400
SSSKLTNLTE DDIELFYWSS LAESNSGFAP LELEGLSQAY TSTIQSSLPS
410 420 430 440 450
KEVFPLEKYS SEPWNLHNLP FENPCLFNYS FSDLSSLTIT RLSIGMVFYT
460 470 480 490 500
HGWTKSSLST GLLHHHRFGD TVTWYVLPPD ESDAFERYLI SSYPQYTMED
510 520 530 540 550
LNRSNGLPVI VSPSSLIENG FHPIAIDLRP NEFLVVSPNS YHMGFHQGFS
560 570 580 590 600
SFESVNFATV NWIKDGLLNS SISVLKSMRI PSSVSYEAVI ISMVLSKNPC
610 620 630 640 650
FSSEWLIKCF EDMIANESAS KNEIMKLVPN IQALKLESSV PLEIRCSNCK
660 670 680 690 700
QPCFLSFMQC HEPKKFICLG DCVKEVSLNA TSWMLFYRWD VHELSNLAER
710 720 730 740 750
FVSLIRGPEE WTNRLRSVLS TSPKPQLKVL KSLLVDAEKA MLTTPETVNL
760 770 780 790 800
RDFVQNANSW IDSVNECLKV ASLKRKKDKK PPLFKAHDHW NNTSNLKDSA
810 820 830 840 850
VLFKVLQTSR SMAFTCQEIE NMKQKAFDLL EFRNRLINSF SGPLDKNTCQ
860 870 880 890 900
RLLTEAELLG FTIPELGIIQ KYLIQFEWLD MFYSFETTRT TDSDLERLIT
910 920 930 940 950
YGVSAGIPED NDYMIFAKAM KGRAEIWENQ VYDTLSKSNI SYDKLSLLRD
960 970 980 990 1000
EAMNLCVNKE LFSKVVGILN NAEEIKNKIA TLCERSQEKD FALRPSIDEV
1010 1020 1030 1040 1050
KEALASAEKL PILSESTVTL QKMYDVVLEW IRRGKRLFGK ANAPLEILGQ
1060 1070 1080 1090 1100
HLDYVEKRNS ASLSLNDRPG PPMEPASRET SPDSEGRLTI RKKKGCIFCF
1110 1120 1130 1140 1150
CRLPESGVMI ECEICHEWYH AKCLKMSKKK LRQDEKFTCP ICDYRVEIPR
1160 1170 1180 1190 1200
LSNRPKLEDL QSLYKDVKLL PFQPKETETL RKVVDLASKF RQEMQALAHN
1210 1220 1230 1240 1250
PFGLTMAEVP LARFYLRKME GAEILLVDET NLFRQKLHEC VPIAPNPPPI
1260 1270 1280 1290 1300
IGESKSTRKP RPTKRQRQIM KQVAEGLLPA SAIAPPKSSN EKKSSNNVKA
1310 1320 1330 1340 1350
VEAETKSKSE KSPKKNGTNI SDANNKNESH VSLMKNWKLG SPAFVTLVKE
1360 1370 1380 1390 1400
KNSSCLCGEE FSPRDSFIDC TICERRFHYD CVGLNNEIAD SVSKFTCPIC
1410 1420 1430 1440 1450
MEQSGGIYPW QLRPRNGMHP DHISGFSKEV ETDPKLGSSG YTLNNSKFDK
1460 1470 1480 1490 1500
AAVSKTLSAQ DVSRLQKVSC GEHLYFGTDV FTPLGDMATS ASMFSLDDSS
1510
EKTDAFTENF LNV
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