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Literature citations Results

UTX-mediated enhancer and chromatin remodeling suppresses myeloid leukemogenesis through noncatalytic inverse regulation of ETS and GATA programs.

Gozdecka M., Meduri E., Mazan M., Tzelepis K., Dudek M., Knights A.J., Pardo M., Yu L., Choudhary J.S., Metzakopian E. et al.

Nat. Genet. 50:883-894(2018) · Mapped (9)

The three-dimensional structure and X-ray sequence reveal that trichomaglin is a novel S-like ribonuclease.

Gan J.H., Yu L., Wu J., Xu H., Choudhary J.S., Blackstock W.P., Liu W.Y., Xia Z.X.

Structure 12:1015-1025(2004) · UniProtKB (1)

The mitochondrial genome of the peach fruit fly, Bactrocera zonata (Saunders) (Diptera: Tephritidae): Complete DNA sequence, genome organization, and phylogenetic analysis with other tephritids using next generation DNA sequencing.

Choudhary J.S., Naaz N., Prabhakar C.S., Rao M.S., Das B.

Gene 569:191-202(2015) · UniProtKB (13)

Targeted tandem affinity purification of PSD-95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins.

Fernandez E., Collins M.O., Uren R.T., Kopanitsa M.V., Komiyama N.H., Croning M.D., Zografos L., Armstrong J.D., Choudhary J.S., Grant S.G.

Mol. Syst. Biol. 5:269-269(2009) · Mapped (392)

SynGAP isoforms exert opposing effects on synaptic strength.

McMahon A.C., Barnett M.W., O'Leary T.S., Stoney P.N., Collins M.O., Papadia S., Choudhary J.S., Komiyama N.H., Grant S.G., Hardingham G.E. et al.

Nat Commun 3:900-900(2012) · UniProtKB (2) · Mapped (1)

Proteomics characterization of abundant Golgi membrane proteins.

Bell A.W., Ward M.A., Blackstock W.P., Freeman H.N.M., Choudhary J.S., Lewis A.P., Chotai D., Fazel A., Gushue J.N., Paiement J. et al.

J. Biol. Chem. 276:5152-5165(2001) · UniProtKB (4) · Mapped (68)

Proteomic analysis of NMDA receptor-adhesion protein signaling complexes.

Husi H., Ward M.A., Choudhary J.S., Blackstock W.P., Grant S.G.

Nat. Neurosci. 3:661-669(2000) · Mapped (109)

Proteomic analysis of in vivo phosphorylated synaptic proteins.

Collins M.O., Yu L., Coba M.P., Husi H., Campuzano I., Blackstock W.P., Choudhary J.S., Grant S.G.

J. Biol. Chem. 280:5972-5982(2005) · Mapped (25)

Prmt5 is essential for early mouse development and acts in the cytoplasm to maintain ES cell pluripotency.

Tee W.W., Pardo M., Theunissen T.W., Yu L., Choudhary J.S., Hajkova P., Surani M.A.

Genes Dev. 24:2772-2777(2010) · Mapped (23)

Myst2/Kat7 histone acetyltransferase interaction proteomics reveals tumour-suppressor Niam as a novel binding partner in embryonic stem cells.

Pardo M., Yu L., Shen S., Tate P., Bode D., Letney B.L., Quelle D.E., Skarnes W., Choudhary J.S.

Sci Rep 7:8157-8157(2017) · Mapped (10)

Molecular characterization and comparison of the components and multiprotein complexes in the postsynaptic proteome.

Collins M.O., Husi H., Yu L., Brandon J.M., Anderson C.N., Blackstock W.P., Choudhary J.S., Grant S.G.

J. Neurochem. 97 Suppl 1:16-23(2006) · Mapped (793)

Integrative epigenomics, transcriptomics and proteomics of patient chondrocytes reveal genes and pathways involved in osteoarthritis.

Steinberg J., Ritchie G.R.S., Roumeliotis T.I., Jayasuriya R.L., Clark M.J., Brooks R.A., Binch A.L.A., Shah K.M., Coyle R., Pardo M. et al.

Sci Rep 7:8935-8935(2017) · Mapped (16)

Genetic analysis of Bactrocera zonata (Diptera: Tephritidae) populations from India based on cox1 and nad1 gene sequences.

Choudhary J.S., Naaz N., Lemtur M., Das B., Singh A.K., Bhatt B.P., Prabhakar C.S.

Mitochondrial DNA A DNA Mapp Seq Anal 29:727-736(2018) · UniProtKB (29)

Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism.

Pettit L.J., Browne H.P., Yu L., Smits W.K., Fagan R.P., Barquist L., Martin M.J., Goulding D., Duncan S.H., Flint H.J. et al.

BMC Genomics 15:160-160(2014) · UniProtKB (41)

Evolutionary expansion and anatomical specialization of synapse proteome complexity.

Emes R.D., Pocklington A.J., Anderson C.N., Bayes A., Collins M.O., Vickers C.A., Croning M.D., Malik B.R., Choudhary J.S., Armstrong J.D. et al.

Nat. Neurosci. 11:799-806(2008) · Mapped (10)

Evolution of complexity in the zebrafish synapse proteome.

Bayes A., Collins M.O., Reig-Viader R., Gou G., Goulding D., Izquierdo A., Choudhary J.S., Emes R.D., Grant S.G.

Nat Commun 8:14613-14613(2017) · Mapped (28)

Eros is a novel transmembrane protein that controls the phagocyte respiratory burst and is essential for innate immunity.

Thomas D.C., Clare S., Sowerby J.M., Pardo M., Juss J.K., Goulding D.A., van der Weyden L., Storisteanu D., Prakash A., Espeli M. et al.

J. Exp. Med. 214:1111-1128(2017) · UniProtKB (5) · Mapped (13)

Cyclic diGMP regulates production of sortase substrates of Clostridium difficile and their surface exposure through ZmpI protease-mediated cleavage.

Peltier J., Shaw H.A., Couchman E.C., Dawson L.F., Yu L., Choudhary J.S., Kaever V., Wren B.W., Fairweather N.F.

J. Biol. Chem. 290:24453-24469(2015) · UniProtKB (1)

Comparative study of human and mouse postsynaptic proteomes finds high compositional conservation and abundance differences for key synaptic proteins.

Bayes A., Collins M.O., Croning M.D., van de Lagemaat L.N., Choudhary J.S., Grant S.G.

PLoS ONE 7:e46683-e46683(2012)

Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux.

Petty N.K., Feltwell T., Pickard D., Clare S., Toribio A.L., Fookes M., Roberts K., Monson R., Nair S., Kingsley R.A. et al.

PLoS Pathog. 7:e1002018-e1002018(2011) · UniProtKB (6)

Characterization of the proteome, diseases and evolution of the human postsynaptic density.

Bayes A., van de Lagemaat L.N., Collins M.O., Croning M.D., Whittle I.R., Choudhary J.S., Grant S.G.

Nat. Neurosci. 14:19-21(2011)

C9orf72 arginine-rich dipeptide proteins interact with ribosomal proteins in vivo to induce a toxic translational arrest that is rescued by eIF1A.

Moens T.G., Niccoli T., Wilson K.M., Atilano M.L., Birsa N., Gittings L.M., Holbling B.V., Dyson M.C., Thoeng A., Neeves J. et al.

Acta Neuropathol. 137:487-500(2019) · Mapped (241)

Autoinhibition Mechanism of the Ubiquitin-Conjugating Enzyme UBE2S by Autoubiquitination.

Liess A.K.L., Kucerova A., Schweimer K., Yu L., Roumeliotis T.I., Diebold M., Dybkov O., Sotriffer C., Urlaub H., Choudhary J.S. et al.

Structure 27:1195-1210.e7(2019) · Mapped (1)

Arc Requires PSD95 for Assembly into Postsynaptic Complexes Involved with Neural Dysfunction and Intelligence.

Fernandez E., Collins M.O., Frank R.A.W., Zhu F., Kopanitsa M.V., Nithianantharajah J., Lempriere S.A., Fricker D., Elsegood K.A., McLaughlin C.L. et al.

Cell Rep 21:679-691(2017) · Mapped (18)

APC15 drives the turnover of MCC-CDC20 to make the spindle assembly checkpoint responsive to kinetochore attachment.

Mansfeld J., Collin P., Collins M.O., Choudhary J.S., Pines J.

Nat. Cell Biol. 13:1234-1243(2011) · UniProtKB (2) · Mapped (4)

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