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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 3,287
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001349
Taxonomy394503 - Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)
StrainATCC 35319 / DSM 5812 / JCM 6584 / H10
Last modifiedJuly 15, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000022065.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) pan proteome (fasta)

Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) is a non-ruminal mesophilic cellulolytic bacterium originally isolated from decayed grass compost. An attractive feature of C. cellulolyticum is its capability of anaerobic fermentation of cellulosic plant materials, yielding acetate, ethanol, lactate, and H2, which could be used as alternative energy and commodity chemicals. The cellulolytic enzymes of this organism are bound to a protein scaffold in an extracellular multienzyme complex called a cellulosome. The bio-energy yields of cellulose fermentation by C. cellulolyticum and other cellulolytic microorganisms vary considerably depending on growth phase, substrate limitation, cultivation mode, nutrient condition, and pH. The proposed genome sequencing of C. cellulolyticum would provide important information regarding the metabolic and regulatory pathways responsible for cellulose degradation and energy production. (adaptated from genomeportal.jgi-psf.org/cloce/cloce.home.html).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome3287

Publications

  1. "Complete sequence of Clostridium cellulolyticum H10."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N.
    Richardson P.
    Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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