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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 2,835
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001938
Taxonomy321332 - Synechococcus sp. (strain JA-2-3B'a(2-13))
StrainJA-2-3B'a(2-13)
Last modifiedJuly 25, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000013225.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Synechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime) pan proteome (fasta)

This is one of 2 genomes of unicellular thermophilic Synechococcus isolated and sequenced from the hot spring cyanobacterial mat in Octopus Spring in Yellowstone National Park, USA. The temperature of the mat typically varies between 50 and 70 degrees Celsius. Synechococcus inhabits the 1 mm-thick upper green layer of the mat, embedded in a matrix of exopolymer and a filamentous Chloroflexus/Roseiflexus-type phototrophic bacteria. The cyanobacteria are photosynthetic and respire during the day, and fix N2 at night. Cyanobacteria that fix N2 have so far been know to do so in specialized cells called heterocysts, to protect the very oxygen-sensitive nitrogenase from O2. These are the first organisms identified that can juggle both metabolic tasks within a single cell at high temperatures. For additional information on this organism see; Allewalt J.P., et al., (2006) Appl. Environ. Microbiol. 72:544-550 (PMID 16391090) and Steunou A.-S. et al., (2006) Proc. Natl. Acad. Sci. U.S.A. 103:2398-2403 (PMID 16467157).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome2835

Publications

  1. "Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses."
    Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F.
    ISME J. 2007:703-713(2007) [PubMed] [Europe PMC] [Abstract]
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