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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 2,002
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006743
Taxonomy557723 - Haemophilus parasuis serovar 5 (strain SH0165)
StrainSH0165
Last modifiedSeptember 30, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000021885.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Haemophilus parasuis serovar 5 (strain SH0165) (Glaesserella parasuis) pan proteome (fasta)

Haemophilus parasuis is a nonmotile, nicotinamide adenine dinucleotide (NAD)-dependent, small pleomorphic Gram-negative rod of the Pasteurellaceae family. It is a commensal organism of the upper respiratory tract of swine that can cause Glaessers disease, a severe systemic disease characterized by fibrinous polyserositis, arthritis, and meningitis. Fifteen serovars of H. parasuis have been reported, but a high percentage of the evaluated isolates are nontypeable; serovars 4 and 5 are widely associated with epidemics and serovar 5 is always associated with high-level virulence in pigs.

Strain SHO165 is a highly virulent serovar 5 strain was isolated from a Glaessers disease outbreak farm. It is predicted to have 6 phage islands, 9 intact toxin and antitoxin systems and a large number of transporter- associated genes. About 9% of the CDS are pseudogenes (modified from PubMed 15892739 and 19074396).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome2002

Publications

  1. "Complete genome sequence of Haemophilus parasuis SH0165."
    Yue M., Yang F., Yang J., Bei W., Cai X., Chen L., Dong J., Zhou R., Jin M., Jin Q., Chen H.
    J. Bacteriol. 2009:1359-1360(2009) [PubMed] [Europe PMC] [Abstract]
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