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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 39,878
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000008225
Taxonomy9483 - Callithrix jacchus
Last modifiedSeptember 29, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_002754865.1 from Ensembl

Callithrix jacchus is also known as the common marmoset or the cotton eared marmoset. Marmosets are social animals and can create large groups with social hierarchy. They can be susceptible to disease which can quickly spread due to their social nature. As a result of their small body size and distinctive physiology, they are an ideal non-human primate model. They have been employed in research on immunity, reproductive biology, brain function and drug toxicity.

The genome sequence was derived from a total of 6X coverage from a female marmoset originating from the Southwest National Primate Research Center and serves as the reference genome. The C. jacchus genome is distributed over 22 pairs of autosomes and two sex chromosomes and is 2.9 Gb in size coding for just over 30,000 genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Unplaced
39865
Mitochondrion13

Publications

  1. Warren W., Ye L., Minx P., Worley K., Gibbs R., Wilson R.K.
    Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
  2. "Callithrix jacchus mitochondrion, complete genome, except for D-loop."
    Sato M., Toyoda A., Saitou N., Kitano T.
    Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases
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