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UniProtKB - A0A024BYC3 (A0A024BYC3_HELPX)

Entry version 46 (13 Nov 2019)
Sequence version 1 (09 Jul 2014)
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Protein

Transcription antitermination protein NusB

Gene

nusB

Organism
Helicobacter pylori (Campylobacter pylori)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.UniRule annotationSAAS annotation

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRNA-bindingUniRule annotationSAAS annotation
Biological processTranscription, Transcription antiterminationUniRule annotationSAAS annotation, Transcription regulation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Transcription antitermination protein NusBUniRule annotationSAAS annotation
Alternative name(s):
Antitermination factor NusBUniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:nusBUniRule annotationImported
ORF Names:ACM29_04715Imported, AEY55_01850Imported, AM496_02540Imported, BB438_01140Imported, BB453_01230Imported, BGL76_00485Imported, C2840_00005Imported, C2844_00005Imported, C2R80_04340Imported, C2S26_02340Imported, CEP78_006205Imported, DD736_07350Imported, DD776_00405Imported, DD777_07620Imported, DDP35_00145Imported, DDP43_00015Imported, DDP46_00070Imported, DDP51_07885Imported, EC518_06365Imported, EC528_05355Imported, EC532_02545Imported, EC544_04540Imported, EC568_02185Imported, EC569_01140Imported, EC578_00875Imported, EC592_02700Imported, EC597_02905Imported, EC598_03740Imported, ECB92_00630Imported, ECC10_01530Imported, ECC17_02015Imported, ECC34_01285Imported, ECC35_00860Imported, EG63_00005Imported, EGW02_00310Imported, NCTC13207_01277Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHelicobacter pylori (Campylobacter pylori)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri210 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Epsilonproteobacteria › Campylobacterales › Helicobacteraceae › Helicobacter
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000288911 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence
  • UP000239200 Componenti: Chromosome
  • UP000244676 Componenti: Unassembled WGS sequence
  • UP000278812 Componenti: Unassembled WGS sequence
  • UP000289022 Componenti: Unassembled WGS sequence
  • UP000220676 Componenti: Unassembled WGS sequence
  • UP000288852 Componenti: Unassembled WGS sequence
  • UP000244736 Componenti: Unassembled WGS sequence
  • UP000278691 Componenti: Unassembled WGS sequence
  • UP000288938 Componenti: Unassembled WGS sequence
  • UP000279456 Componenti: Unassembled WGS sequence
  • UP000288775 Componenti: Unassembled WGS sequence
  • UP000288956 Componenti: Unassembled WGS sequence
  • UP000037119 Componenti: Unassembled WGS sequence
  • UP000288755 Componenti: Unassembled WGS sequence
  • UP000025233 Componenti: Chromosome
  • UP000269325 Componenti: Unassembled WGS sequence
  • UP000236564 Componenti: Chromosome
  • UP000219759 Componenti: Unassembled WGS sequence
  • UP000266894 Componenti: Unassembled WGS sequence
  • UP000288722 Componenti: Unassembled WGS sequence
  • UP000279504 Componenti: Unassembled WGS sequence
  • UP000288909 Componenti: Unassembled WGS sequence
  • UP000254357 Componenti: Unassembled WGS sequence
  • UP000288752 Componenti: Unassembled WGS sequence
  • UP000037777 Componenti: Unassembled WGS sequence
  • UP000256776 Componenti: Unassembled WGS sequence
  • UP000289009 Componenti: Unassembled WGS sequence
  • UP000288959 Componenti: Unassembled WGS sequence
  • UP000036866 Componenti: Unassembled WGS sequence
  • UP000220541 Componenti: Unassembled WGS sequence
  • UP000288771 Componenti: Unassembled WGS sequence
  • UP000276316 Componenti: Unassembled WGS sequence
  • UP000198044 Componenti: Unassembled WGS sequence
  • UP000288966 Componenti: Unassembled WGS sequence
  • UP000288735 Componenti: Unassembled WGS sequence

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		1345592.CBOM010000010_gene956

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini6 – 129NusBInterPro annotationAdd BLAST124

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the NusB family.UniRule annotationSAAS annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG4105M7K Bacteria
COG0781 LUCA

Database of Orthologous Groups

More...OrthoDBi		1574817at2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.10.940.10, 1 hit

HAMAP database of protein families

More...HAMAPi		MF_00073 NusB, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR035926 NusB-like_sf
IPR011605 NusB_fam
IPR006027 NusB_RsmB_TIM44

The PANTHER Classification System

More...PANTHERi		PTHR11078 PTHR11078, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF01029 NusB, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF48013 SSF48013, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR01951 nusB, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A024BYC3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MATRTQARGA VVELLYAFES GNEEIKKIAS SMLEEKKIKN NQLAFALSLF 
        60         70         80         90        100
NGVLEKINEI DALIEPHLKD WDFKRLGSME KAILRLGAYE IGFTPTQNPI 
       110        120        130 
IINECIELGK LYAEPNTPKF LNAILDSLSK KLTQKPLN
Length:138
Mass (Da):15,521
Last modified:July 9, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4321C874F2064C84
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CP007604 Genomic DNA Translation: AHZ26183.1
CP026326 Genomic DNA Translation: AUV77232.1
CP026515 Genomic DNA Translation: AUZ23261.1
LFKK01000008 Genomic DNA Translation: KNE13208.1
LFIU01000009 Genomic DNA Translation: KNX48933.1
LIXH01000012 Genomic DNA Translation: KOS34304.1
MILN01000010 Genomic DNA Translation: OPG55978.1
MBGO01000002 Genomic DNA Translation: PDW34356.1
MBHC01000001 Genomic DNA Translation: PDW55556.1
NJFC02000001 Genomic DNA Translation: PNL41945.1
QBQL01000020 Genomic DNA Translation: PUD19827.1
QBPR01000021 Genomic DNA Translation: PUD31609.1
QDJM01000001 Genomic DNA Translation: RDY82418.1
QDJS01000031 Genomic DNA Translation: RKV07966.1
QDJQ01000001 Genomic DNA Translation: RKV09293.1
QDJU01000001 Genomic DNA Translation: RKV15378.1
QEGF01000022 Genomic DNA Translation: RKV15748.1
QEHI01000026 Genomic DNA Translation: RKV58080.1
QEHH01000001 Genomic DNA Translation: RKV61232.1
RPFU01000001 Genomic DNA Translation: RPF66908.1
RJED01000001 Genomic DNA Translation: RVY16496.1
RJEM01000002 Genomic DNA Translation: RVY28839.1
RJET01000002 Genomic DNA Translation: RVY34746.1
RJFK01000001 Genomic DNA Translation: RVY53740.1
RJFJ01000002 Genomic DNA Translation: RVY61099.1
RJGV01000007 Genomic DNA Translation: RVZ14190.1
RJGY01000001 Genomic DNA Translation: RVZ15860.1
RJHH01000006 Genomic DNA Translation: RVZ28176.1
RJGP01000296 Genomic DNA Translation: RVZ39533.1
RJHX01000003 Genomic DNA Translation: RVZ58293.1
RJHY01000001 Genomic DNA Translation: RVZ62960.1
RJID01000001 Genomic DNA Translation: RVZ69460.1
RJIL01000003 Genomic DNA Translation: RVZ74062.1
RJIR01000009 Genomic DNA Translation: RVZ88619.1
RJIQ01000009 Genomic DNA Translation: RVZ93798.1
UGHN01000001 Genomic DNA Translation: STO74266.1

NCBI Reference Sequences

More...RefSeqi		WP_000235740.1, NZ_VEZM01000002.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AHZ26183; AHZ26183; EG63_00005
KNE13208; KNE13208; ACM29_04715
KNX48933; KNX48933; AEY55_01850
KOS34304; KOS34304; AM496_02540

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|1111674.3.peg.306

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP007604 Genomic DNA Translation: AHZ26183.1
CP026326 Genomic DNA Translation: AUV77232.1
CP026515 Genomic DNA Translation: AUZ23261.1
LFKK01000008 Genomic DNA Translation: KNE13208.1
LFIU01000009 Genomic DNA Translation: KNX48933.1
LIXH01000012 Genomic DNA Translation: KOS34304.1
MILN01000010 Genomic DNA Translation: OPG55978.1
MBGO01000002 Genomic DNA Translation: PDW34356.1
MBHC01000001 Genomic DNA Translation: PDW55556.1
NJFC02000001 Genomic DNA Translation: PNL41945.1
QBQL01000020 Genomic DNA Translation: PUD19827.1
QBPR01000021 Genomic DNA Translation: PUD31609.1
QDJM01000001 Genomic DNA Translation: RDY82418.1
QDJS01000031 Genomic DNA Translation: RKV07966.1
QDJQ01000001 Genomic DNA Translation: RKV09293.1
QDJU01000001 Genomic DNA Translation: RKV15378.1
QEGF01000022 Genomic DNA Translation: RKV15748.1
QEHI01000026 Genomic DNA Translation: RKV58080.1
QEHH01000001 Genomic DNA Translation: RKV61232.1
RPFU01000001 Genomic DNA Translation: RPF66908.1
RJED01000001 Genomic DNA Translation: RVY16496.1
RJEM01000002 Genomic DNA Translation: RVY28839.1
RJET01000002 Genomic DNA Translation: RVY34746.1
RJFK01000001 Genomic DNA Translation: RVY53740.1
RJFJ01000002 Genomic DNA Translation: RVY61099.1
RJGV01000007 Genomic DNA Translation: RVZ14190.1
RJGY01000001 Genomic DNA Translation: RVZ15860.1
RJHH01000006 Genomic DNA Translation: RVZ28176.1
RJGP01000296 Genomic DNA Translation: RVZ39533.1
RJHX01000003 Genomic DNA Translation: RVZ58293.1
RJHY01000001 Genomic DNA Translation: RVZ62960.1
RJID01000001 Genomic DNA Translation: RVZ69460.1
RJIL01000003 Genomic DNA Translation: RVZ74062.1
RJIR01000009 Genomic DNA Translation: RVZ88619.1
RJIQ01000009 Genomic DNA Translation: RVZ93798.1
UGHN01000001 Genomic DNA Translation: STO74266.1
RefSeqiWP_000235740.1, NZ_VEZM01000002.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi1345592.CBOM010000010_gene956

Genome annotation databases

EnsemblBacteriaiAHZ26183; AHZ26183; EG63_00005
KNE13208; KNE13208; ACM29_04715
KNX48933; KNX48933; AEY55_01850
KOS34304; KOS34304; AM496_02540
PATRICifig|1111674.3.peg.306

Phylogenomic databases

eggNOGiENOG4105M7K Bacteria
COG0781 LUCA
OrthoDBi1574817at2

Family and domain databases

Gene3Di1.10.940.10, 1 hit
HAMAPiMF_00073 NusB, 1 hit
InterProiView protein in InterPro
IPR035926 NusB-like_sf
IPR011605 NusB_fam
IPR006027 NusB_RsmB_TIM44
PANTHERiPTHR11078 PTHR11078, 1 hit
PfamiView protein in Pfam
PF01029 NusB, 1 hit
SUPFAMiSSF48013 SSF48013, 1 hit
TIGRFAMsiTIGR01951 nusB, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A024BYC3_HELPX
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A024BYC3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 9, 2014
Last sequence update: July 9, 2014
Last modified: November 13, 2019
This is version 46 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteomeImported
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