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Entry version 36 (31 Jul 2019)
Sequence version 1 (12 Jun 2007)
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Protein
Submitted name:

Vitellogenin C

Gene
N/A
Organism
Morone americana (White perch) (Roccus americanus)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Vitellogenin CImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMorone americana (White perch) (Roccus americanus)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri46260 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiNeoteleosteiAcanthomorphataEupercariaMoronidaeMorone

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 15Sequence analysisAdd BLAST15
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_501199986116 – 1275Sequence analysisAdd BLAST1260

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini24 – 662VitellogeninInterPro annotationAdd BLAST639

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1054 – 1076DisorderedSequence analysisAdd BLAST23

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1054 – 1068PolarSequence analysisAdd BLAST15

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.10.20, 1 hit
2.20.50.20, 2 hits
2.20.90.10, 1 hit
2.30.230.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR015819 Lipid_transp_b-sht_shell
IPR001747 Lipid_transpt_N
IPR011030 Lipovitellin_superhlx_dom
IPR015816 Vitellinogen_b-sht_N
IPR015258 Vitellinogen_b-sht_shell
IPR037088 Vitellinogen_b-sht_shell_sf
IPR015255 Vitellinogen_open_b-sht
IPR015817 Vitellinogen_open_b-sht_sub1

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF09172 DUF1943, 1 hit
PF09175 DUF1944, 1 hit
PF01347 Vitellogenin_N, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01169 DUF1943, 1 hit
SM01170 DUF1944, 1 hit
SM00638 LPD_N, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48431 SSF48431, 1 hit
SSF56968 SSF56968, 3 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51211 VITELLOGENIN, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A5GXQ3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MQGLLFCCLV ALATCQSVHY ELSLNPKKTY EYKYEGGVNF GLGIPNLAES
60 70 80 90 100
GVRIACKVKI VGVSAQTFIL QASNLVFEEF NGFPGKNTYN ASPKLTQRIA
110 120 130 140 150
AQLIKPFMFN YTCGHVSDIH ASAEISDTVV NIVRGILGFF QVTVKTTQRI
160 170 180 190 200
YELEEVGIHG KCQSNYATEE NMETKDMTIT QVVDVSGCRE KAAIYRGMAT
210 220 230 240 250
AVLDKVSKQR GESVISTVRY VYTVKATEEG GLITRAHGLE RQHFSSFNVK
260 270 280 290 300
GGSFKMQAMK EIVLLGVSDT ARAVIFGPME NKGNLVYKFV NAEANVPIMM
310 320 330 340 350
QNLEDPLPKA VELIKQLAEA NKYQIDSATT EDTIKLYQLL RVMPYEELEA
360 370 380 390 400
VWKQLLGNEE HRRWFLDMIV EVSDARILKF LEVRFQSGDI SVIEAGEILL
410 420 430 440 450
LAINHLQAIP ELVEMAKVFL TMPFSKSNIY LWHTVALTYG SLVYKHCAYY
460 470 480 490 500
TPCPINSVQP LLDMAMESLR NGNEADMVIA LKALGNAGHP GSIKTIMRFL
510 520 530 540 550
PGVAATPVDL PPRVLSAAVQ SMRLIAARDP HSVQDITMSL FLQKNLPTEI
560 570 580 590 600
RMLAFMILFD TKPTLALVSV VTAHLQEEKD LHVVSFAYSY LRSFARSSTP
610 620 630 640 650
ENHFLSIACN VAVKVLAPKF GRLSYHYSKA MRMDWFNDDF LIGTAAEVFM
660 670 680 690 700
LRSATNIFPT EIMMKGKFFF IGRILQLLEL GIRAEGIKEL FGTSIPGFTG
710 720 730 740 750
DLSFSDFQAI FNVLQNWEIL PNDKPLLSAF SRVFGQEWFF ADINKDFIQN
760 770 780 790 800
IIRAVTPSAE KESPLWAVIE DLQRGVSWHR TKPFLIFEVR YFQATTLGLP
810 820 830 840 850
LEISKYYQSV NGITVNAKAA VNPPLPEHLA QLLTSEISLE TDGFIGYTKD
860 870 880 890 900
LWVFYGINTA LFQCGSELKS KMPLAIPWKF SAKINVREKK FELDFLPCKK
910 920 930 940 950
EFEVFSVSSN VYAVTRNIEE PALAKMTPIM PNAIDSNDEV VHMGPTDVRP
960 970 980 990 1000
EPEQMLRPNT WHPIAKMCAE SNIYGAGLCV ESELRREYYH EEYPLYYFLG
1010 1020 1030 1040 1050
YTHLAFKVVP AQTIKAVEKI HFEVNAGPSR HPMSARQLLD TLRRLSKEAT
1060 1070 1080 1090 1100
QRIRLPSDSA SSVRGSPNNH HHHLMEGWNS TPEAVFNIKA FAMSGNQKPE
1110 1120 1130 1140 1150
GYDAAIYYTP EANTENAQLI VSQVGEDTNW KMCVDTIVHA HAEAKAHIRW
1160 1170 1180 1190 1200
GAECQTYEMS MRGATAHLPG SKPTLMAKAH WARIPETMAD MGRGIESYIP
1210 1220 1230 1240 1250
GIAFLLGFSE QHERNAKQEV SASVVAASAG SINMKIKFPE YTVFRQAIPV
1260 1270
PLPPASFLEF QQDIRNTTID SFGRA
Length:1,275
Mass (Da):142,946
Last modified:June 12, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6F9DF7E4DF06495D
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
DQ020122 mRNA Translation: AAZ17417.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ020122 mRNA Translation: AAZ17417.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Family and domain databases

Gene3Di1.25.10.20, 1 hit
2.20.50.20, 2 hits
2.20.90.10, 1 hit
2.30.230.10, 1 hit
InterProiView protein in InterPro
IPR015819 Lipid_transp_b-sht_shell
IPR001747 Lipid_transpt_N
IPR011030 Lipovitellin_superhlx_dom
IPR015816 Vitellinogen_b-sht_N
IPR015258 Vitellinogen_b-sht_shell
IPR037088 Vitellinogen_b-sht_shell_sf
IPR015255 Vitellinogen_open_b-sht
IPR015817 Vitellinogen_open_b-sht_sub1
PfamiView protein in Pfam
PF09172 DUF1943, 1 hit
PF09175 DUF1944, 1 hit
PF01347 Vitellogenin_N, 1 hit
SMARTiView protein in SMART
SM01169 DUF1943, 1 hit
SM01170 DUF1944, 1 hit
SM00638 LPD_N, 1 hit
SUPFAMiSSF48431 SSF48431, 1 hit
SSF56968 SSF56968, 3 hits
PROSITEiView protein in PROSITE
PS51211 VITELLOGENIN, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA5GXQ3_MORAM
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A5GXQ3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: July 31, 2019
This is version 36 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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