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Entry version 23 (31 Jul 2019)
Sequence version 1 (13 Jul 2010)
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Protein
Submitted name:

C2H2-type transcription factor Trm2

Gene

TRM2

Organism
Candida boidinii (Yeast)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
C2H2-type transcription factor Trm2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:TRM2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCandida boidinii (Yeast)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri5477 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesPichiaceaeOgataeaOgataea/Candida clade

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini39 – 66C2H2-typeInterPro annotationAdd BLAST28
Domaini67 – 95C2H2-typeInterPro annotationAdd BLAST29

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 21DisorderedSequence analysisAdd BLAST21
Regioni104 – 179DisorderedSequence analysisAdd BLAST76
Regioni241 – 280DisorderedSequence analysisAdd BLAST40
Regioni366 – 405DisorderedSequence analysisAdd BLAST40
Regioni427 – 454DisorderedSequence analysisAdd BLAST28
Regioni475 – 523DisorderedSequence analysisAdd BLAST49
Regioni586 – 646DisorderedSequence analysisAdd BLAST61
Regioni1035 – 1058DisorderedSequence analysisAdd BLAST24

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi108 – 179PolarSequence analysisAdd BLAST72
Compositional biasi586 – 629PolarSequence analysisAdd BLAST44

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Family and domain databases

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00096 zf-C2H2, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

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SMARTi
View protein in SMART
SM00355 ZnF_C2H2, 2 hits

Superfamily database of structural and functional annotation

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SUPFAMi
SSF57667 SSF57667, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 2 hits
PS50157 ZINC_FINGER_C2H2_2, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

D5MTG8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTTASNTIIT GTSTGKLPGE VPEALQVNGT TPSGKPRLFV CSTCTRAFAR
60 70 80 90 100
QEHLKRHERS HTKEKPFSCG VCSRKFSRRD LLLRHAQKLH AGCSDTAITR
110 120 130 140 150
LRKKSIRRSS TSSSIGSTPM NHNNSTNDDS VSSTIRSKKM VRGSISGASS
160 170 180 190 200
SMNNNSINNH ANNNSSFSTG SISKPRASSI SNLKNSNKIE TIKTILENKT
210 220 230 240 250
EDPIQNYNNN HNLNNMGGHN SISPSSSLSS NFVVENQFNM GQNDSKNTYN
260 270 280 290 300
NFNNSNGNGN GNGNGNGNGN NHVATNNSSN NNLQQFNEDV LTDLPFLRNH
310 320 330 340 350
LPMNRRASFS AMSGNNYATS FNQPYASETV EFATPQMMPM DDAENWLNNL
360 370 380 390 400
DEIPSLDFIN PNFQQKQHDQ NNQQQQQQQQ QQKYHLQQQQ QFQNQNQQTQ
410 420 430 440 450
LKNESPAEAI SGYSFYDVPS KNVESLFSHS NRMPNSNNNG NNNSNINNSS
460 470 480 490 500
NLTQNMLNNH LNSLLLSPLL HDSPDIDSSP SSQAQVWSNF NNNNNGRQHS
510 520 530 540 550
KLANNSNGNK NNNDNNSSKS KVHNFNNDIN ELELLTDLNA SRDYNLPAGY
560 570 580 590 600
SFYGSTDIQS NLNNNSSCSS SNATISPILL DNAYGNSSTI SNQPPNNLNS
610 620 630 640 650
NSSFNSPFSR PNTTSQQQQQ TLPQQQQHQH HQHHQQHQSH YNDQQQQLNS
660 670 680 690 700
EVKNIPNNIS NNFEKYSTNL LFTNLIRNCI HFSLSKYPFI GLQNPTIPDN
710 720 730 740 750
DKLNFYTKVF EEKFLLHHPF IHKSYLNEFS LIKTTLKNIN TNKLDDLANS
760 770 780 790 800
NGNINSSGTS DYIKVSLIWF PLLVATIGAV YWNRKADAAN LYEASRRSIP
810 820 830 840 850
VYLDFRKRQQ PPMQNQQNGE TPQLNDNSSP LWLIQSLTLS IIYGLFADND
860 870 880 890 900
ICLNVIIRQV NALNSLLKSS GLTMISWNYD SNKNIDDKYF ENYIQYESTV
910 920 930 940 950
RTIHTIFHIS AMLSSLYNIV PSLKVDELFI DLPVNSIVWN TNNTNEFKQV
960 970 980 990 1000
FMTFIHSKPE KFSKILGDLL EFPFNSFHSS SISPGSSTHS SSSYHSTRSL
1010 1020 1030 1040 1050
SVKNFLADNQ ISEFGLNCLL NGLHQYNYFQ QLAESNDANN NNNNNNDNNN
1060 1070 1080 1090 1100
TGVHNNSNID ANLLDKLSNS QKYSSVSNNH TNQFSNISNE VKSIRVDTRI
1110 1120 1130 1140 1150
QDIINSWDNM ISGSSIYDQN SELVNDCKIL NHYLSIKSSG IISLNRVKES
1160 1170 1180 1190 1200
VWLKSWNDMC ELYYNTYKFK EADILRDNTL SDNLRDVVGH SVDILKLVLV
1210 1220 1230 1240 1250
FFKKIDKSSS ISSLSSAVGG SKIGEAVNSL TLNEDQLKEI TDENLGELDF
1260 1270 1280 1290 1300
ENFSKHLSID LQILFDVFLV LVKFLITFER NSKIKMRYNN LNSNINFVHH
1310 1320 1330 1340 1350
FELQSNILPF NYNTNSAING PIPGLSENLN SISLNGNTNK GGHIGNEEDG
1360 1370 1380 1390 1400
DEAARSKQND LEFFKLYKLI FKLFLNLEFF LKVNYGYHDF ESEFANLTIS
1410 1420 1430 1440 1450
SIVNKYKNKD INIGIDSNVN KFVDGNNYDK LHGSKLHNNT SDEDLSPRDR
1460 1470 1480 1490 1500
DLIINELINF KLPFKLLKIG EFLFSFLYDK NIKFVNFKNL SSGLFHLRIF

LENREEYFE
Length:1,509
Mass (Da):170,744
Last modified:July 13, 2010 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iBF0C47F1D6F3D6E1
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AB548760 Genomic DNA Translation: BAJ07608.1

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB548760 Genomic DNA Translation: BAJ07608.1

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Family and domain databases

InterProiView protein in InterPro
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00096 zf-C2H2, 2 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 2 hits
SUPFAMiSSF57667 SSF57667, 1 hit
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 2 hits
PS50157 ZINC_FINGER_C2H2_2, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiD5MTG8_CANBO
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: D5MTG8
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: July 31, 2019
This is version 23 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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