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Entry version 44 (16 Oct 2019)
Sequence version 1 (27 Jul 2011)
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Protein
Submitted name:

Apolipoprotein B

Gene
N/A
Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-XTR-3000471 Scavenging by Class B Receptors
R-XTR-3000480 Scavenging by Class A Receptors
R-XTR-3000497 Scavenging by Class H Receptors
R-XTR-381426 Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
R-XTR-432142 Platelet sensitization by LDL
R-XTR-8856825 Cargo recognition for clathrin-mediated endocytosis
R-XTR-8856828 Clathrin-mediated endocytosis
R-XTR-8866423 VLDL assembly
R-XTR-8957275 Post-translational protein phosphorylation
R-XTR-8963888 Chylomicron assembly
R-XTR-8963901 Chylomicron remodeling
R-XTR-8964026 Chylomicron clearance
R-XTR-8964038 LDL clearance
R-XTR-8964041 LDL remodeling
R-XTR-975634 Retinoid metabolism and transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Apolipoprotein BImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri8364 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000008143 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
F6Z8Q2

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSXETG00000026768 Expressed in 7 organ(s), highest expression level in mesonephros

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
8364.ENSXETP00000019543

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini33 – 662VitellogeninInterPro annotationAdd BLAST630

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili2093 – 2120Sequence analysisAdd BLAST28
Coiled coili2157 – 2201Sequence analysisAdd BLAST45
Coiled coili3178 – 3198Sequence analysisAdd BLAST21
Coiled coili4089 – 4109Sequence analysisAdd BLAST21
Coiled coili4255 – 4282Sequence analysisAdd BLAST28
Coiled coili4284 – 4304Sequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IRRQ Eukaryota
ENOG410Y5RH LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00590000083139

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
F6Z8Q2

Identification of Orthologs from Complete Genome Data

More...
OMAi
SIQDWAE

TreeFam database of animal gene trees

More...
TreeFami
TF331316

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.10.20, 1 hit
2.30.230.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR022176 ApoB100_C
IPR015819 Lipid_transp_b-sht_shell
IPR001747 Lipid_transpt_N
IPR009454 Lipid_transpt_open_b-sht
IPR011030 Lipovitellin_superhlx_dom
IPR015816 Vitellinogen_b-sht_N
IPR015255 Vitellinogen_open_b-sht

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF12491 ApoB100_C, 1 hit
PF06448 DUF1081, 1 hit
PF09172 DUF1943, 1 hit
PF01347 Vitellogenin_N, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01169 DUF1943, 1 hit
SM00638 LPD_N, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48431 SSF48431, 1 hit
SSF56968 SSF56968, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51211 VITELLOGENIN, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

F6Z8Q2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
YRPARSCMKA TETLLTLVGL ISTFYVAEAA LKFKHLRKYV YNYEAATTSG
60 70 80 90 100
VSGTADSQSG TKFNCKVELE VPQSCNFILR VKQCTLREVY GVSSEGKALL
110 120 130 140 150
KKSKNSEDFS NAMTKYEVKV TVQDGKNVVL YPDKDEPLNV LNMKRGILSA
160 170 180 190 200
LLVDETQETD YMVRNGGQDT VYGKCTSEIK VTGRKGNTPT DVTVKRNLKT
210 220 230 240 250
CDRFTPIRDY VNPLAIIKGM NRPLSTLISS SQVCQYSLDP KRRHITEASC
260 270 280 290 300
AETHLFLPFS YRDQYGINGK VTQTLKLEDV AKTNSRDFDP DTSLARGFAL
310 320 330 340 350
EATKTVSKNE DAALENLQEL QKLSTSEQNQ QRASRFYKLV TALRGLNNDS
360 370 380 390 400
LGPLVPRLMQ LSSPIALQAL TQCGTPECFG GILQVLRSGD ISPVISDTVT
410 420 430 440 450
FGLGLLPSPC TKRVRELLNM AQYQSSRASF YALSHAVSKF YEEQQTVTDE
460 470 480 490 500
LRDVADFMLS LIGNECTGNE DKTFQTLKAI GIMGSAMEAT NPEIKSSLLK
510 520 530 540 550
CARGQASSPD IQKAAIQAFR RMTMTDDVRG VLVQVFQDSN APEQKRLAAY
560 570 580 590 600
LMLMKNPSQS DLRKVVKVLL RDDNKQVKNF VSSHIRNILQ MDAPEAEGLK
610 620 630 640 650
TKLQEALKSS QPLNVDTDFT KLSQNYHFSR DVTIPGLYDA AGADMVANII
660 670 680 690 700
FDSEGYMPKE AMLEATLNVF GKSVDMFEIG VEGKGFEPTL DSLFGNGGFF
710 720 730 740 750
PDCTLKALYW ADGKLPDKVT EILFKWYGVP RQSGQNQDLT KAILYNVEKL
760 770 780 790 800
IKEVRSNYAP EAKLYLEILG KELGYLQLND FRTLGSMLLR TLHTTQELPA
810 820 830 840 850
QIMKAISKGA ETDLFLHYIF MDNEFDLPTG SGLQLQVSFS GVIAPGTRAG
860 870 880 890 900
MKFGGRNIRA ELSMKPAVAV EFVTQMGIQI PEFSRHAVLM NTNLYHESGF
910 920 930 940 950
EGRFSMKEGQ LKFSIPAPKT PTKLFSIRNQ LNLVFASKTE IMASILQNRV
960 970 980 990 1000
AQASCRPLFK GINSCTNLEY SNASGKEGAP YFPLTGEARF DLEIQPTGEV
1010 1020 1030 1040 1050
EEYSVIASYN LNREDEDMVD TFILSAQAEG SGPSDAKLIT KYNRNKVILT
1060 1070 1080 1090 1100
SDVQVPNYDV NFGAIMKLND ESTESKKSYA VMLDVHNQQV PEVTLTGKIS
1110 1120 1130 1140 1150
YDGMRDAQME GMLSIPRLKV QLTSQASLQD FVQSLRIQMQ SSAQICSLSG
1160 1170 1180 1190 1200
SGSVAFTYDN EKIDLEWSTE TNTNVKKIIS QLPDVEFSDV YNYPEMMKNY
1210 1220 1230 1240 1250
ANEALDFKVA QTDMTMRHIA SQSLVNKLTA LKELDFPELG FPPLPEILFL
1260 1270 1280 1290 1300
NSNGRIRGMF SKDSIDITIP LPYGGRTTKQ LMSMRSPPVD MPSIGLKFPS
1310 1320 1330 1340 1350
KEFRIPSFTI PESYQLKVPL FGSIDLSSNV KSNYYNWSAS YSAGNTPSDF
1360 1370 1380 1390 1400
PSYKADYEMK ANAIWDILSY KIDGAAAFSY NPDKFVLMSY TGSVLHNLLE
1410 1420 1430 1440 1450
ANINLKETYN FQSNPIVKET IMFDVKSILG VEGSFTSEAE TASTNNLVTC
1460 1470 1480 1490 1500
DYNINGQFKL ASLLTTSDYT LRVTFNTDNL QLNTESSFNV DLSIIKLTNK
1510 1520 1530 1540 1550
MSAMILSERV TITSTTDVQD GALTNTMTLD YRNRQLTYKS DTNGNYYNLI
1560 1570 1580 1590 1600
GLNKFEVTLS RQMAAIRSEY QADYKRNRFY TLLSGSLNSQ GLELNADVSL
1610 1620 1630 1640 1650
NSQVNRAAHK ATLKISQEGL STSATTNVNF SPLTLENDLN AAIGLTGGMM
1660 1670 1680 1690 1700
KMTANGRYKE HNAKFTVDGK AALTELSFGS VYQATVFGVG SKNVLSFKIS
1710 1720 1730 1740 1750
KEGLKFSNNM MGSYDQMKLE NSNDLVISGS LAHFNSKLEN ALSTDKSYKH
1760 1770 1780 1790 1800
EFDLQLQPYT MTAMLNNEFL YGALQLSNMG QMELAVFSIK VNGNMRGAFD
1810 1820 1830 1840 1850
KDNVKHSYAF SFSDLTANVK TDTVANIQGT AHSHNVNMEI AGLSASFSSS
1860 1870 1880 1890 1900
TNSETKSTRF TNAIRSVVAP FTVTVDSHTN ADGRLSIFGD HSGELYSKFI
1910 1920 1930 1940 1950
LKAEPLSFNL VHDFRGSTSH TLNSRNRHTT LLDYKVNALV TPSEQASSWK
1960 1970 1980 1990 2000
LKSQLNQNTH NQDFSLYNNA EKIGIELSGQ TLADLSILDG HIRTPFGVFN
2010 2020 2030 2040 2050
PIDALSLRDS VTTPQEFSIS GFVKYDKNKD VHVINLPFIE NIGSLFEKVR
2060 2070 2080 2090 2100
SILLTSLQAL QNSLKSINID QYVKKYKMTL NKIPEQMNDY INNLDLERRI
2110 2120 2130 2140 2150
NELKEQLIAL TKDVKLSSEE LYKAISSTLQ TARENLMSYL SGIQQYIQEN
2160 2170 2180 2190 2200
YDLERLTKAI ETLLQQFIEN VKSLEKQYNI REKAIDMVKG LQNQVEKINI
2210 2220 2230 2240 2250
NELGESLAAW IKNVDDLYQI QANLRQILQK IQSLIQSINI EQIAINVREY
2260 2270 2280 2290 2300
FQSIDFSEYR QRLMRALPIN EINTAAEYIQ DYIVILLMEY EVTEKFNAVV
2310 2320 2330 2340 2350
DKLQDVVSEY EIDKKVQTLL ENFIQLLNQQ KVKETIKKVT DMLTNIDIKM
2360 2370 2380 2390 2400
YYRRLMAFIQ DSVKKVKEYD FKKLVDDINE FLNVCVMKLK SFNYEKFVDD
2410 2420 2430 2440 2450
VNNWIQEVRQ TINDNMKALE LPQKAQALKQ YMNDVSVMAT EYVQQVRDTR
2460 2470 2480 2490 2500
LSAVMQWYED IMSSAILNEL RTRILQYLED VRDTINSMNI KQEIQIYLQK
2510 2520 2530 2540 2550
LSQAYQRIVT YVTNEWKNMS EKIEMFAKEH SIEEWAERFK LFIEEGFPVP
2560 2570 2580 2590 2600
EMNLGLMTIP PFEVSLRALK DATFKTPSFT ILLTDLQVPS VEINLKKLKE
2610 2620 2630 2640 2650
IEIPSRFVIP EFTILSSIKV PSYVIDLHEL KLRIVRIIDQ VLHSDFQWPS
2660 2670 2680 2690 2700
PETYLKDLKM SDMGFPAITF PEMNMPSMQI PEIKIPKLNL NNFQFADIQI
2710 2720 2730 2740 2750
PEFRLPQIPH SVSVPTFGKL SSSFIVKSPF LTLSTAAEMK NGTVSEKNPE
2760 2770 2780 2790 2800
FIASLSATST SMIEALAFNL VADARISAPM LEQLILKETV AASNKYFKLD
2810 2820 2830 2840 2850
HNSEATFAGS YIQTKVQTVA SLKTEKNEAS LDNAILVRLQ GRITAESNTK
2860 2870 2880 2890 2900
YSHKLNIPEF DISSQLELQN DVESFLEAGR ILLISSGKGN WKWACPLISD
2910 2920 2930 2940 2950
EGTHQSNLKF NIMGSLVELS GSNKITDKYL KLDQAFKYDS ALLSYVNVDI
2960 2970 2980 2990 3000
TSKAESPYVG NSIISVKGSG QLSDMTLGLT ATHNAELSGR ATGTIQNALT
3010 3020 3030 3040 3050
FAAKPFDINL STTNNGNLKV GFPLKLTGKI EFLNNYNFIL NTNVQQISWQ
3060 3070 3080 3090 3100
VNGRFNQYKV SHTISVGNNE DSVVAIVGMN GEANLDFLTI PISIPEMNVP
3110 3120 3130 3140 3150
YTSMKTPEVK DFSLWEQAGL KKLLTTTKQN VDLNVKLQYK KNMDVHSIQL
3160 3170 3180 3190 3200
PLDSLYDSIN SNMKVLTKNF EKGRDNTLRM LTDSYNEAKA KFDKYKVENS
3210 3220 3230 3240 3250
AGKAPRTIRV PGYTIPLLNI EVSPFSAELP AFGYVIPKEI STPSFSLPVM
3260 3270 3280 3290 3300
GFSIPTYTVV LPSLELPVLH VPNTLRKLTL PKLKLPSGPH TISIPAMGNL
3310 3320 3330 3340 3350
TYDFSFKSNV ISLTTSAGLY NQSDLSARIS VASTSIINAL QFTIDGTTGL
3360 3370 3380 3390 3400
TRKRGLKLAT ALAVKHVFVD GKHESSMSLG KRNIEASVVT NAKVSLPIIQ
3410 3420 3430 3440 3450
LTFKQELNGN TKTKPNLSSK MSLSYSENDA IMVSKGMIDH TLTIEGLTSY
3460 3470 3480 3490 3500
FSMETKTNGD ITGTLLGQQG FSGKFTNEAN TYLNSNGLRS SMKLVGSSKA
3510 3520 3530 3540 3550
DSVGNLDVAE NLAVEATTSR IYAVWEHNGE NYLRVTPLFT TKGLQNCKAT
3560 3570 3580 3590 3600
FELALWSLLA NLQVKIEQPN SMLENLALNQ EILLSANEEK QEIGLNGDGT
3610 3620 3630 3640 3650
FHTIILAHNV KLSNDKTDAR FQIDGSLQGH ASMLKYVILP VYEKSLWEIL
3660 3670 3680 3690 3700
KFDVTTSEDK QQYLNVSTSV TYTKNKEGFW FPIPINKVAD GNLNVPSTKL
3710 3720 3730 3740 3750
DLNNIKISEI KSTLPFDINL PSLPQIKFPK VDITTKYITV EEYKIPFFEV
3760 3770 3780 3790 3800
TIPQHQITLA RYTLPKSFYN IDFNSLVNKI ADIDLPTIEI PEQNIEIPPI
3810 3820 3830 3840 3850
KMNLPAGIFI PAFGALAGTA QLSSPIYNLT WTNKMANNAD GFVASIDASS
3860 3870 3880 3890 3900
SSTLRFLEYD LDAVASASTA PTNGLVLQGT FAHTDLSINW KDDINFNGLR
3910 3920 3930 3940 3950
IPGHNIDIDI KSPTFTDVQI RSQQENNKIT SSVSSSSAGT LGLVLEKESS
3960 3970 3980 3990 4000
ALKGKLFSRS LSTPGKDTLI MKGEVSLKNP ERIQYKINWR EEAAMDVLNG
4010 4020 4030 4040 4050
LKERLPKISN SIHNCVNKYH KEHFGMEISE DKIASTYRST ANEINNIEYQ
4060 4070 4080 4090 4100
LQSTARGASD KYNEIVNSAQ KWYQDPKDMS MFLNDGEYKD KAIELVRAYQ
4110 4120 4130 4140 4150
NKMKDLIDAA IKFVKNTRFQ LPGQSRKYTG EELFNLGMKN VASNIDAFFK
4160 4170 4180 4190 4200
AMQQIYDACV QYINRTELKI PGTEVTIKGK EITDACKSFS ANLERMTKKA
4210 4220 4230 4240 4250
IQDLQGVSLE SALNQLKSFI QVITQKTVDM IKALQTKNIE DVKLQFQQMY
4260 4270 4280 4290 4300
SDAMKSDYAR ELQNLVEELK KATSQLQKYA QTGHEELSEK LKQLQVYAKA
4310 4320 4330 4340 4350
LREEYLDPNI VGWSVKYYEI EEKVIQLLQK IVDSLKDLSS QYGINTAEIT
4360 4370 4380 4390 4400
EQTKDFVKKY YQHANDLLTN ANGQGKELIR RASIDLEDRV TKWSATARQL
4410 4420 4430 4440 4450
SQNANKILNE KLQATSNLFV NSYEKLIAEA SRLIDIIIQN YNSFIEYVNQ

LLQSIQ
Length:4,456
Mass (Da):499,736
Last modified:July 27, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7EAB41A487F237D8
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AAMC01034692 Genomic DNA No translation available.
AAMC01034693 Genomic DNA No translation available.

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSXETT00000019543; ENSXETP00000019543; ENSXETG00000026768

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01034692 Genomic DNA No translation available.
AAMC01034693 Genomic DNA No translation available.

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi8364.ENSXETP00000019543

Proteomic databases

PaxDbiF6Z8Q2

Genome annotation databases

EnsembliENSXETT00000019543; ENSXETP00000019543; ENSXETG00000026768

Phylogenomic databases

eggNOGiENOG410IRRQ Eukaryota
ENOG410Y5RH LUCA
GeneTreeiENSGT00590000083139
InParanoidiF6Z8Q2
OMAiSIQDWAE
TreeFamiTF331316

Enzyme and pathway databases

ReactomeiR-XTR-3000471 Scavenging by Class B Receptors
R-XTR-3000480 Scavenging by Class A Receptors
R-XTR-3000497 Scavenging by Class H Receptors
R-XTR-381426 Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
R-XTR-432142 Platelet sensitization by LDL
R-XTR-8856825 Cargo recognition for clathrin-mediated endocytosis
R-XTR-8856828 Clathrin-mediated endocytosis
R-XTR-8866423 VLDL assembly
R-XTR-8957275 Post-translational protein phosphorylation
R-XTR-8963888 Chylomicron assembly
R-XTR-8963901 Chylomicron remodeling
R-XTR-8964026 Chylomicron clearance
R-XTR-8964038 LDL clearance
R-XTR-8964041 LDL remodeling
R-XTR-975634 Retinoid metabolism and transport

Gene expression databases

BgeeiENSXETG00000026768 Expressed in 7 organ(s), highest expression level in mesonephros

Family and domain databases

Gene3Di1.25.10.20, 1 hit
2.30.230.10, 1 hit
InterProiView protein in InterPro
IPR022176 ApoB100_C
IPR015819 Lipid_transp_b-sht_shell
IPR001747 Lipid_transpt_N
IPR009454 Lipid_transpt_open_b-sht
IPR011030 Lipovitellin_superhlx_dom
IPR015816 Vitellinogen_b-sht_N
IPR015255 Vitellinogen_open_b-sht
PfamiView protein in Pfam
PF12491 ApoB100_C, 1 hit
PF06448 DUF1081, 1 hit
PF09172 DUF1943, 1 hit
PF01347 Vitellogenin_N, 1 hit
SMARTiView protein in SMART
SM01169 DUF1943, 1 hit
SM00638 LPD_N, 1 hit
SUPFAMiSSF48431 SSF48431, 1 hit
SSF56968 SSF56968, 2 hits
PROSITEiView protein in PROSITE
PS51211 VITELLOGENIN, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiF6Z8Q2_XENTR
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F6Z8Q2
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 16, 2019
This is version 44 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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