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Entry version 112 (13 Nov 2019)
Sequence version 2 (10 Aug 2010)
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Protein

Ubiquitin-60S ribosomal protein L40

Gene

UBA52

Organism
Bos taurus (Bovine)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Ubiquitin: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity).By similarity
60S ribosomal protein L40: Component of the 60S subunit of the ribosome.By similarity

Miscellaneous

Ubiquitin is encoded by 4 different genes. Uba52 and Rps27a genes code for a single copy of ubiquitin fused to the ribosomal proteins L40 and S27a, respectively. UBB and UBC genes code for a polyubiquitin precursor with exact head to tail repeats, the number of repeats differ between species and strains.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei54Activating enzyme1
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections (‘Function’, ‘PTM / Processing’, ‘Pathology and Biotech’) according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei68Essential for function1
Binding sitei72Activating enzyme1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-BTA-110312 Translesion synthesis by REV1
R-BTA-110314 Recognition of DNA damage by PCNA-containing replication complex
R-BTA-110320 Translesion Synthesis by POLH
R-BTA-1169091 Activation of NF-kappaB in B cells
R-BTA-1234176 Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha
R-BTA-1253288 Downregulation of ERBB4 signaling
R-BTA-1295596 Spry regulation of FGF signaling
R-BTA-1358803 Downregulation of ERBB2:ERBB3 signaling
R-BTA-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-BTA-168638 NOD1/2 Signaling Pathway
R-BTA-174048 APC/C:Cdc20 mediated degradation of Cyclin B
R-BTA-174084 Autodegradation of Cdh1 by Cdh1:APC/C
R-BTA-174154 APC/C:Cdc20 mediated degradation of Securin
R-BTA-174178 APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1
R-BTA-174184 Cdc20:Phospho-APC/C mediated degradation of Cyclin A
R-BTA-179409 APC-Cdc20 mediated degradation of Nek2A
R-BTA-1799339 SRP-dependent cotranslational protein targeting to membrane
R-BTA-182971 EGFR downregulation
R-BTA-187577 SCF(Skp2)-mediated degradation of p27/p21
R-BTA-195253 Degradation of beta-catenin by the destruction complex
R-BTA-201681 TCF dependent signaling in response to WNT
R-BTA-202424 Downstream TCR signaling
R-BTA-205043 NRIF signals cell death from the nucleus
R-BTA-209543 p75NTR recruits signalling complexes
R-BTA-209560 NF-kB is activated and signals survival
R-BTA-2122948 Activated NOTCH1 Transmits Signal to the Nucleus
R-BTA-2173788 Downregulation of TGF-beta receptor signaling
R-BTA-2173791 TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition)
R-BTA-2173795 Downregulation of SMAD2/3:SMAD4 transcriptional activity
R-BTA-2173796 SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
R-BTA-2467813 Separation of Sister Chromatids
R-BTA-2559580 Oxidative Stress Induced Senescence
R-BTA-2559582 Senescence-Associated Secretory Phenotype (SASP)
R-BTA-2559585 Oncogene Induced Senescence
R-BTA-2565942 Regulation of PLK1 Activity at G2/M Transition
R-BTA-2672351 Stimuli-sensing channels
R-BTA-2871837 FCERI mediated NF-kB activation
R-BTA-3134975 Regulation of innate immune responses to cytosolic DNA
R-BTA-349425 Autodegradation of the E3 ubiquitin ligase COP1
R-BTA-3769402 Deactivation of the beta-catenin transactivating complex
R-BTA-382556 ABC-family proteins mediated transport
R-BTA-445989 TAK1 activates NFkB by phosphorylation and activation of IKKs complex
R-BTA-450302 activated TAK1 mediates p38 MAPK activation
R-BTA-450321 JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1
R-BTA-450408 AUF1 (hnRNP D0) binds and destabilizes mRNA
R-BTA-4608870 Asymmetric localization of PCP proteins
R-BTA-4641257 Degradation of AXIN
R-BTA-4641258 Degradation of DVL
R-BTA-4641263 Regulation of FZD by ubiquitination
R-BTA-5205685 Pink/Parkin Mediated Mitophagy
R-BTA-532668 N-glycan trimming in the ER and Calnexin/Calreticulin cycle
R-BTA-5357905 Regulation of TNFR1 signaling
R-BTA-5357956 TNFR1-induced NFkappaB signaling pathway
R-BTA-5358346 Hedgehog ligand biogenesis
R-BTA-5607761 Dectin-1 mediated noncanonical NF-kB signaling
R-BTA-5607764 CLEC7A (Dectin-1) signaling
R-BTA-5610780 Degradation of GLI1 by the proteasome
R-BTA-5610785 GLI3 is processed to GLI3R by the proteasome
R-BTA-5632684 Hedgehog 'on' state
R-BTA-5654726 Negative regulation of FGFR1 signaling
R-BTA-5654727 Negative regulation of FGFR2 signaling
R-BTA-5654732 Negative regulation of FGFR3 signaling
R-BTA-5654733 Negative regulation of FGFR4 signaling
R-BTA-5655862 Translesion synthesis by POLK
R-BTA-5656121 Translesion synthesis by POLI
R-BTA-5656169 Termination of translesion DNA synthesis
R-BTA-5658442 Regulation of RAS by GAPs
R-BTA-5668541 TNFR2 non-canonical NF-kB pathway
R-BTA-5675221 Negative regulation of MAPK pathway
R-BTA-5675482 Regulation of necroptotic cell death
R-BTA-5676590 NIK-->noncanonical NF-kB signaling
R-BTA-5684264 MAP3K8 (TPL2)-dependent MAPK1/3 activation
R-BTA-5685942 HDR through Homologous Recombination (HRR)
R-BTA-5687128 MAPK6/MAPK4 signaling
R-BTA-5689603 UCH proteinases
R-BTA-5689877 Josephin domain DUBs
R-BTA-5689880 Ub-specific processing proteases
R-BTA-5689896 Ovarian tumor domain proteases
R-BTA-5689901 Metalloprotease DUBs
R-BTA-5693565 Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
R-BTA-5696394 DNA Damage Recognition in GG-NER
R-BTA-5696395 Formation of Incision Complex in GG-NER
R-BTA-5696397 Gap-filling DNA repair synthesis and ligation in GG-NER
R-BTA-5696400 Dual Incision in GG-NER
R-BTA-6781823 Formation of TC-NER Pre-Incision Complex
R-BTA-6782135 Dual incision in TC-NER
R-BTA-6782210 Gap-filling DNA repair synthesis and ligation in TC-NER
R-BTA-6783310 Fanconi Anemia Pathway
R-BTA-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-BTA-6804756 Regulation of TP53 Activity through Phosphorylation
R-BTA-6804757 Regulation of TP53 Degradation
R-BTA-6804760 Regulation of TP53 Activity through Methylation
R-BTA-68827 CDT1 association with the CDC6:ORC:origin complex
R-BTA-69017 CDK-mediated phosphorylation and removal of Cdc6
R-BTA-69231 Cyclin D associated events in G1
R-BTA-69481 G2/M Checkpoints
R-BTA-69541 Stabilization of p53
R-BTA-69601 Ubiquitin Mediated Degradation of Phosphorylated Cdc25A
R-BTA-72689 Formation of a pool of free 40S subunits
R-BTA-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-BTA-75815 Ubiquitin-dependent degradation of Cyclin D
R-BTA-8849469 PTK6 Regulates RTKs and Their Effectors AKT1 and DOK1
R-BTA-8852276 The role of GTSE1 in G2/M progression after G2 checkpoint
R-BTA-8854050 FBXL7 down-regulates AURKA during mitotic entry and in early mitosis
R-BTA-8856825 Cargo recognition for clathrin-mediated endocytosis
R-BTA-8856828 Clathrin-mediated endocytosis
R-BTA-8863795 Downregulation of ERBB2 signaling
R-BTA-8866652 Synthesis of active ubiquitin: roles of E1 and E2 enzymes
R-BTA-8866654 E3 ubiquitin ligases ubiquitinate target proteins
R-BTA-8939236 RUNX1 regulates transcription of genes involved in differentiation of HSCs
R-BTA-8939902 Regulation of RUNX2 expression and activity
R-BTA-8941858 Regulation of RUNX3 expression and activity
R-BTA-8948747 Regulation of PTEN localization
R-BTA-8948751 Regulation of PTEN stability and activity
R-BTA-8951664 Neddylation
R-BTA-901032 ER Quality Control Compartment (ERQC)
R-BTA-9010553 Regulation of expression of SLITs and ROBOs
R-BTA-9013507 NOTCH3 Activation and Transmission of Signal to the Nucleus
R-BTA-9020702 Interleukin-1 signaling
R-BTA-9033241 Peroxisomal protein import
R-BTA-912631 Regulation of signaling by CBL
R-BTA-917729 Endosomal Sorting Complex Required For Transport (ESCRT)
R-BTA-917937 Iron uptake and transport
R-BTA-936440 Negative regulators of DDX58/IFIH1 signaling
R-BTA-937039 IRAK1 recruits IKK complex
R-BTA-937042 IRAK2 mediated activation of TAK1 complex
R-BTA-937072 TRAF6-mediated induction of TAK1 complex within TLR4 complex
R-BTA-9613829 Chaperone Mediated Autophagy
R-BTA-9615710 Microautophagy
R-BTA-9645460 Alpha-protein kinase 1 signaling pathway
R-BTA-975110 TRAF6 mediated IRF7 activation in TLR7/8 or 9 signaling
R-BTA-975144 IRAK1 recruits IKK complex upon TLR7/8 or 9 stimulation
R-BTA-975163 IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation
R-BTA-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-BTA-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
R-BTA-983168 Antigen processing: Ubiquitination & Proteasome degradation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Ubiquitin-60S ribosomal protein L40
Alternative name(s):
Ubiquitin A-52 residue ribosomal protein fusion product 1
Cleaved into the following 2 chains:
Alternative name(s):
CEP52
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:UBA52
Synonyms:UBCEP2
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBos taurus (Bovine)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9913 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000009136 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 7

Organism-specific databases

Vertebrate Gene Nomenclature Database

More...
VGNCi
VGNC:49988 UBA52

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003964321 – 76UbiquitinAdd BLAST76
ChainiPRO_000013874877 – 12860S ribosomal protein L40Add BLAST52

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section describes <strong>covalent linkages</strong> of various types formed <strong>between two proteins (interchain cross-links)</strong> or <strong>between two parts of the same protein (intrachain cross-links)</strong>, except the disulfide bonds that are annotated in the <a href="http://www.uniprot.org/manual/disulfid">'Disulfide bond'</a> subsection.<p><a href='/help/crosslnk' target='_top'>More...</a></p>Cross-linki6Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity
Cross-linki11Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity
Cross-linki27Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity
Cross-linki29Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity
Cross-linki48Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity
Cross-linki63Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei65Phosphoserine; by PINK1By similarity1
Modified residuei76ADP-ribosylglycineBy similarity1
Cross-linki76Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
Modified residuei98N6,N6,N6-trimethyllysineBy similarity1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Ubiquitin: Phosphorylated at Ser-65 by PINK1 during mitophagy. Phosphorylated ubiquitin specifically binds and activates parkin (PRKN), triggering mitophagy. Phosphorylation does not affect E1-mediated E2 charging of ubiquitin but affects discharging of E2 enzymes to form polyubiquitin chains. It also affects deubiquitination by deubiquitinase enzymes such as USP30.By similarity
Ubiquitin: Mono-ADP-ribosylated at the C-terminus by PARP9, a component of the PPAR9-DTX3L complex. ADP-ribosylation requires processing by E1 and E2 enzymes and prevents ubiquitin conjugation to substrates such as histones.By similarity

Keywords - PTMi

ADP-ribosylation, Isopeptide bond, Methylation, Phosphoprotein, Ubl conjugation

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P63048

PRoteomics IDEntifications database

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PRIDEi
P63048

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSBTAG00000007737 Expressed in 9 organ(s), highest expression level in testis

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Ribosomal protein L40 is part of the 60S ribosomal subunit.

Interacts with UBQLN1 (via UBA domain).

By similarity

GO - Molecular functioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
9913.ENSBTAP00000010176

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1128
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
P63048

Database of comparative protein structure models

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ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

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PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1 – 76Ubiquitin-likePROSITE-ProRule annotationAdd BLAST76

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

In the N-terminal section; belongs to the ubiquitin family.Curated
In the C-terminal section; belongs to the eukaryotic ribosomal protein eL40 family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0003 Eukaryota
COG1552 LUCA
COG5272 LUCA

Ensembl GeneTree

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GeneTreei
ENSGT00940000153593

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P63048

KEGG Orthology (KO)

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KOi
K02927

Identification of Orthologs from Complete Genome Data

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OMAi
AREYNQN

Database of Orthologous Groups

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OrthoDBi
1536766at2759

TreeFam database of animal gene trees

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TreeFami
TF352129

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.20.28.70, 1 hit

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR038587 L40e_sf
IPR001975 Ribosomal_L40e
IPR000626 Ubiquitin-like_dom
IPR029071 Ubiquitin-like_domsf
IPR019954 Ubiquitin_CS
IPR019956 Ubiquitin_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01020 Ribosomal_L40e, 1 hit
PF00240 ubiquitin, 1 hit

Protein Motif fingerprint database; a protein domain database

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PRINTSi
PR00348 UBIQUITIN

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01377 Ribosomal_L40e, 1 hit
SM00213 UBQ, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF54236 SSF54236, 1 hit

PROSITE; a protein domain and family database

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PROSITEi
View protein in PROSITE
PS00299 UBIQUITIN_1, 1 hit
PS50053 UBIQUITIN_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

P63048-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MQIFVKTLTG KTITLEVEPS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL
60 70 80 90 100
EDGRTLSDYN IQKESTLHLV LRLRGGIIEP SLRQLAQKYN CDKMICRKCY
110 120
ARLHPRAVNC RKKKCGHTNN LRPKKKVK
Length:128
Mass (Da):14,728
Last modified:August 10, 2010 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7BCB602ABEFAD02A
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAC56447 differs from that shown. Reason: Frameshift.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AB098957 mRNA Translation: BAC56447.1 Frameshift.
BC102248 mRNA Translation: AAI02249.1

NCBI Reference Sequences

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RefSeqi
NP_001069831.1, NM_001076363.2

Genome annotation databases

Ensembl eukaryotic genome annotation project

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Ensembli
ENSBTAT00000010176; ENSBTAP00000010176; ENSBTAG00000007737

Database of genes from NCBI RefSeq genomes

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GeneIDi
615199

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
bta:615199

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB098957 mRNA Translation: BAC56447.1 Frameshift.
BC102248 mRNA Translation: AAI02249.1
RefSeqiNP_001069831.1, NM_001076363.2

3D structure databases

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Protein Data Bank Europe

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PDBei

Protein Data Bank RCSB

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RCSB PDBi

Protein Data Bank Japan

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PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4LJOX-ray1.56B1-76[»]
4LJPX-ray2.15B1-76[»]
4S22X-ray2.30A/B/C/D1-76[»]
SMRiP63048
ModBaseiSearch...
PDBe-KBiSearch...

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000010176

Proteomic databases

PaxDbiP63048
PRIDEiP63048

Genome annotation databases

EnsembliENSBTAT00000010176; ENSBTAP00000010176; ENSBTAG00000007737
GeneIDi615199
KEGGibta:615199

Organism-specific databases

Comparative Toxicogenomics Database

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CTDi
7311
VGNCiVGNC:49988 UBA52

Phylogenomic databases

eggNOGiKOG0003 Eukaryota
COG1552 LUCA
COG5272 LUCA
GeneTreeiENSGT00940000153593
InParanoidiP63048
KOiK02927
OMAiAREYNQN
OrthoDBi1536766at2759
TreeFamiTF352129

Enzyme and pathway databases

ReactomeiR-BTA-110312 Translesion synthesis by REV1
R-BTA-110314 Recognition of DNA damage by PCNA-containing replication complex
R-BTA-110320 Translesion Synthesis by POLH
R-BTA-1169091 Activation of NF-kappaB in B cells
R-BTA-1234176 Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha
R-BTA-1253288 Downregulation of ERBB4 signaling
R-BTA-1295596 Spry regulation of FGF signaling
R-BTA-1358803 Downregulation of ERBB2:ERBB3 signaling
R-BTA-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-BTA-168638 NOD1/2 Signaling Pathway
R-BTA-174048 APC/C:Cdc20 mediated degradation of Cyclin B
R-BTA-174084 Autodegradation of Cdh1 by Cdh1:APC/C
R-BTA-174154 APC/C:Cdc20 mediated degradation of Securin
R-BTA-174178 APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1
R-BTA-174184 Cdc20:Phospho-APC/C mediated degradation of Cyclin A
R-BTA-179409 APC-Cdc20 mediated degradation of Nek2A
R-BTA-1799339 SRP-dependent cotranslational protein targeting to membrane
R-BTA-182971 EGFR downregulation
R-BTA-187577 SCF(Skp2)-mediated degradation of p27/p21
R-BTA-195253 Degradation of beta-catenin by the destruction complex
R-BTA-201681 TCF dependent signaling in response to WNT
R-BTA-202424 Downstream TCR signaling
R-BTA-205043 NRIF signals cell death from the nucleus
R-BTA-209543 p75NTR recruits signalling complexes
R-BTA-209560 NF-kB is activated and signals survival
R-BTA-2122948 Activated NOTCH1 Transmits Signal to the Nucleus
R-BTA-2173788 Downregulation of TGF-beta receptor signaling
R-BTA-2173791 TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition)
R-BTA-2173795 Downregulation of SMAD2/3:SMAD4 transcriptional activity
R-BTA-2173796 SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
R-BTA-2467813 Separation of Sister Chromatids
R-BTA-2559580 Oxidative Stress Induced Senescence
R-BTA-2559582 Senescence-Associated Secretory Phenotype (SASP)
R-BTA-2559585 Oncogene Induced Senescence
R-BTA-2565942 Regulation of PLK1 Activity at G2/M Transition
R-BTA-2672351 Stimuli-sensing channels
R-BTA-2871837 FCERI mediated NF-kB activation
R-BTA-3134975 Regulation of innate immune responses to cytosolic DNA
R-BTA-349425 Autodegradation of the E3 ubiquitin ligase COP1
R-BTA-3769402 Deactivation of the beta-catenin transactivating complex
R-BTA-382556 ABC-family proteins mediated transport
R-BTA-445989 TAK1 activates NFkB by phosphorylation and activation of IKKs complex
R-BTA-450302 activated TAK1 mediates p38 MAPK activation
R-BTA-450321 JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1
R-BTA-450408 AUF1 (hnRNP D0) binds and destabilizes mRNA
R-BTA-4608870 Asymmetric localization of PCP proteins
R-BTA-4641257 Degradation of AXIN
R-BTA-4641258 Degradation of DVL
R-BTA-4641263 Regulation of FZD by ubiquitination
R-BTA-5205685 Pink/Parkin Mediated Mitophagy
R-BTA-532668 N-glycan trimming in the ER and Calnexin/Calreticulin cycle
R-BTA-5357905 Regulation of TNFR1 signaling
R-BTA-5357956 TNFR1-induced NFkappaB signaling pathway
R-BTA-5358346 Hedgehog ligand biogenesis
R-BTA-5607761 Dectin-1 mediated noncanonical NF-kB signaling
R-BTA-5607764 CLEC7A (Dectin-1) signaling
R-BTA-5610780 Degradation of GLI1 by the proteasome
R-BTA-5610785 GLI3 is processed to GLI3R by the proteasome
R-BTA-5632684 Hedgehog 'on' state
R-BTA-5654726 Negative regulation of FGFR1 signaling
R-BTA-5654727 Negative regulation of FGFR2 signaling
R-BTA-5654732 Negative regulation of FGFR3 signaling
R-BTA-5654733 Negative regulation of FGFR4 signaling
R-BTA-5655862 Translesion synthesis by POLK
R-BTA-5656121 Translesion synthesis by POLI
R-BTA-5656169 Termination of translesion DNA synthesis
R-BTA-5658442 Regulation of RAS by GAPs
R-BTA-5668541 TNFR2 non-canonical NF-kB pathway
R-BTA-5675221 Negative regulation of MAPK pathway
R-BTA-5675482 Regulation of necroptotic cell death
R-BTA-5676590 NIK-->noncanonical NF-kB signaling
R-BTA-5684264 MAP3K8 (TPL2)-dependent MAPK1/3 activation
R-BTA-5685942 HDR through Homologous Recombination (HRR)
R-BTA-5687128 MAPK6/MAPK4 signaling
R-BTA-5689603 UCH proteinases
R-BTA-5689877 Josephin domain DUBs
R-BTA-5689880 Ub-specific processing proteases
R-BTA-5689896 Ovarian tumor domain proteases
R-BTA-5689901 Metalloprotease DUBs
R-BTA-5693565 Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
R-BTA-5696394 DNA Damage Recognition in GG-NER
R-BTA-5696395 Formation of Incision Complex in GG-NER
R-BTA-5696397 Gap-filling DNA repair synthesis and ligation in GG-NER
R-BTA-5696400 Dual Incision in GG-NER
R-BTA-6781823 Formation of TC-NER Pre-Incision Complex
R-BTA-6782135 Dual incision in TC-NER
R-BTA-6782210 Gap-filling DNA repair synthesis and ligation in TC-NER
R-BTA-6783310 Fanconi Anemia Pathway
R-BTA-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-BTA-6804756 Regulation of TP53 Activity through Phosphorylation
R-BTA-6804757 Regulation of TP53 Degradation
R-BTA-6804760 Regulation of TP53 Activity through Methylation
R-BTA-68827 CDT1 association with the CDC6:ORC:origin complex
R-BTA-69017 CDK-mediated phosphorylation and removal of Cdc6
R-BTA-69231 Cyclin D associated events in G1
R-BTA-69481 G2/M Checkpoints
R-BTA-69541 Stabilization of p53
R-BTA-69601 Ubiquitin Mediated Degradation of Phosphorylated Cdc25A
R-BTA-72689 Formation of a pool of free 40S subunits
R-BTA-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-BTA-75815 Ubiquitin-dependent degradation of Cyclin D
R-BTA-8849469 PTK6 Regulates RTKs and Their Effectors AKT1 and DOK1
R-BTA-8852276 The role of GTSE1 in G2/M progression after G2 checkpoint
R-BTA-8854050 FBXL7 down-regulates AURKA during mitotic entry and in early mitosis
R-BTA-8856825 Cargo recognition for clathrin-mediated endocytosis
R-BTA-8856828 Clathrin-mediated endocytosis
R-BTA-8863795 Downregulation of ERBB2 signaling
R-BTA-8866652 Synthesis of active ubiquitin: roles of E1 and E2 enzymes
R-BTA-8866654 E3 ubiquitin ligases ubiquitinate target proteins
R-BTA-8939236 RUNX1 regulates transcription of genes involved in differentiation of HSCs
R-BTA-8939902 Regulation of RUNX2 expression and activity
R-BTA-8941858 Regulation of RUNX3 expression and activity
R-BTA-8948747 Regulation of PTEN localization
R-BTA-8948751 Regulation of PTEN stability and activity
R-BTA-8951664 Neddylation
R-BTA-901032 ER Quality Control Compartment (ERQC)
R-BTA-9010553 Regulation of expression of SLITs and ROBOs
R-BTA-9013507 NOTCH3 Activation and Transmission of Signal to the Nucleus
R-BTA-9020702 Interleukin-1 signaling
R-BTA-9033241 Peroxisomal protein import
R-BTA-912631 Regulation of signaling by CBL
R-BTA-917729 Endosomal Sorting Complex Required For Transport (ESCRT)
R-BTA-917937 Iron uptake and transport
R-BTA-936440 Negative regulators of DDX58/IFIH1 signaling
R-BTA-937039 IRAK1 recruits IKK complex
R-BTA-937042 IRAK2 mediated activation of TAK1 complex
R-BTA-937072 TRAF6-mediated induction of TAK1 complex within TLR4 complex
R-BTA-9613829 Chaperone Mediated Autophagy
R-BTA-9615710 Microautophagy
R-BTA-9645460 Alpha-protein kinase 1 signaling pathway
R-BTA-975110 TRAF6 mediated IRF7 activation in TLR7/8 or 9 signaling
R-BTA-975144 IRAK1 recruits IKK complex upon TLR7/8 or 9 stimulation
R-BTA-975163 IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation
R-BTA-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-BTA-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
R-BTA-983168 Antigen processing: Ubiquitination & Proteasome degradation

Gene expression databases

BgeeiENSBTAG00000007737 Expressed in 9 organ(s), highest expression level in testis

Family and domain databases

Gene3Di2.20.28.70, 1 hit
InterProiView protein in InterPro
IPR038587 L40e_sf
IPR001975 Ribosomal_L40e
IPR000626 Ubiquitin-like_dom
IPR029071 Ubiquitin-like_domsf
IPR019954 Ubiquitin_CS
IPR019956 Ubiquitin_dom
PfamiView protein in Pfam
PF01020 Ribosomal_L40e, 1 hit
PF00240 ubiquitin, 1 hit
PRINTSiPR00348 UBIQUITIN
SMARTiView protein in SMART
SM01377 Ribosomal_L40e, 1 hit
SM00213 UBQ, 1 hit
SUPFAMiSSF54236 SSF54236, 1 hit
PROSITEiView protein in PROSITE
PS00299 UBIQUITIN_1, 1 hit
PS50053 UBIQUITIN_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRL40_BOVIN
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P63048
Secondary accession number(s): O97577
, P02248, P02249, P02250, P62990, P80169, Q01235, Q24K23, Q28169, Q28170, Q29120, Q3T0V5, Q3ZCE3, Q862C1, Q862F4, Q862M4, Q862T5, Q862X8, Q91887, Q91888
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 31, 2004
Last sequence update: August 10, 2010
Last modified: November 13, 2019
This is version 112 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
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