UniProtKB - P98066 (TSG6_HUMAN)
Protein
Tumor necrosis factor-inducible gene 6 protein
Gene
TNFAIP6
Organism
Homo sapiens (Human)
Status
Functioni
Possibly involved in cell-cell and cell-matrix interactions during inflammation and tumorigenesis.
GO - Molecular functioni
- hyaluronic acid binding Source: ProtInc
GO - Biological processi
- cell adhesion Source: UniProtKB-KW
- cell-cell signaling Source: ProtInc
- inflammatory response Source: ProtInc
- negative regulation of inflammatory response Source: CACAO
- neutrophil degranulation Source: Reactome
- ovulation Source: Ensembl
- positive regulation of cell migration Source: Ensembl
- signal transduction Source: ProtInc
Keywordsi
Biological process | Cell adhesion |
Enzyme and pathway databases
Reactomei | R-HSA-6798695 Neutrophil degranulation |
SIGNORi | P98066 |
Names & Taxonomyi
Protein namesi | Recommended name: Tumor necrosis factor-inducible gene 6 proteinAlternative name(s): Hyaluronate-binding protein TNF-stimulated gene 6 protein Short name: TSG-6 Tumor necrosis factor alpha-induced protein 6 Short name: TNF alpha-induced protein 6 |
Gene namesi | Name:TNFAIP6 Synonyms:TSG6 |
Organismi | Homo sapiens (Human) |
Taxonomic identifieri | 9606 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Proteomesi |
|
Organism-specific databases
HGNCi | HGNC:11898 TNFAIP6 |
MIMi | 600410 gene |
neXtProti | NX_P98066 |
Subcellular locationi
Extracellular region or secreted
- extracellular region Source: Reactome
- extracellular space Source: GO_Central
Other locations
- ficolin-1-rich granule lumen Source: Reactome
- tertiary granule lumen Source: Reactome
Pathology & Biotechi
Organism-specific databases
DisGeNETi | 7130 |
OpenTargetsi | ENSG00000123610 |
PharmGKBi | PA36595 |
Miscellaneous databases
Pharosi | P98066 |
Chemistry databases
DrugBanki | DB00945 Acetylsalicylic acid DB08818 Hyaluronic acid |
Polymorphism and mutation databases
BioMutai | TNFAIP6 |
DMDMi | 68067717 |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Signal peptidei | 1 – 17 | 1 PublicationAdd BLAST | 17 | |
ChainiPRO_0000026692 | 18 – 277 | Tumor necrosis factor-inducible gene 6 proteinAdd BLAST | 260 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Disulfide bondi | 58 ↔ 127 | |||
Disulfide bondi | 82 ↔ 103 | |||
Glycosylationi | 118 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Disulfide bondi | 135 ↔ 161 | By similarity | ||
Disulfide bondi | 188 ↔ 210 | By similarity | ||
Glycosylationi | 258 | N-linked (GlcNAc...) asparagineSequence analysis | 1 |
Keywords - PTMi
Disulfide bond, GlycoproteinProteomic databases
MassIVEi | P98066 |
PaxDbi | P98066 |
PeptideAtlasi | P98066 |
PRIDEi | P98066 |
ProteomicsDBi | 57783 |
PTM databases
iPTMneti | P98066 |
PhosphoSitePlusi | P98066 |
Expressioni
Tissue specificityi
Found in the synovial fluid of patients with rheumatoid arthritis.1 Publication
Inductioni
By TNF.
Gene expression databases
Bgeei | ENSG00000123610 Expressed in 178 organ(s), highest expression level in layer of synovial tissue |
Genevisiblei | P98066 HS |
Organism-specific databases
HPAi | CAB032719 HPA050884 |
Interactioni
Subunit structurei
Interacts with inter-alpha-inhibitor (I-alpha-I). Chondroitin sulfate may be required for the stability of the complex.
1 PublicationBinary interactionsi
Protein-protein interaction databases
BioGridi | 112984, 22 interactors |
IntActi | P98066, 25 interactors |
STRINGi | 9606.ENSP00000243347 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
SMRi | P98066 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | P98066 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 36 – 129 | LinkPROSITE-ProRule annotationAdd BLAST | 94 | |
Domaini | 135 – 247 | CUBPROSITE-ProRule annotationAdd BLAST | 113 |
Keywords - Domaini
SignalPhylogenomic databases
eggNOGi | KOG1218 Eukaryota KOG3714 Eukaryota ENOG410ZI1H LUCA |
GeneTreei | ENSGT00940000157201 |
HOGENOMi | HOG000043074 |
InParanoidi | P98066 |
KOi | K19018 |
OMAi | AGRFCGD |
OrthoDBi | 934805at2759 |
PhylomeDBi | P98066 |
TreeFami | TF334173 |
Family and domain databases
CDDi | cd00041 CUB, 1 hit |
Gene3Di | 2.60.120.290, 1 hit 3.10.100.10, 1 hit |
InterProi | View protein in InterPro IPR016186 C-type_lectin-like/link_sf IPR016187 CTDL_fold IPR000859 CUB_dom IPR000538 Link_dom IPR035914 Sperma_CUB_dom_sf |
Pfami | View protein in Pfam PF00431 CUB, 1 hit PF00193 Xlink, 1 hit |
PRINTSi | PR01265 LINKMODULE |
SMARTi | View protein in SMART SM00042 CUB, 1 hit SM00445 LINK, 1 hit |
SUPFAMi | SSF49854 SSF49854, 1 hit SSF56436 SSF56436, 1 hit |
PROSITEi | View protein in PROSITE PS01180 CUB, 1 hit PS01241 LINK_1, 1 hit PS50963 LINK_2, 1 hit |
i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
P98066-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MIILIYLFLL LWEDTQGWGF KDGIFHNSIW LERAAGVYHR EARSGKYKLT
60 70 80 90 100
YAEAKAVCEF EGGHLATYKQ LEAARKIGFH VCAAGWMAKG RVGYPIVKPG
110 120 130 140 150
PNCGFGKTGI IDYGIRLNRS ERWDAYCYNP HAKECGGVFT DPKQIFKSPG
160 170 180 190 200
FPNEYEDNQI CYWHIRLKYG QRIHLSFLDF DLEDDPGCLA DYVEIYDSYD
210 220 230 240 250
DVHGFVGRYC GDELPDDIIS TGNVMTLKFL SDASVTAGGF QIKYVAMDPV
260 270
SKSSQGKNTS TTSTGNKNFL AGRFSHL
Natural variant
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Natural variantiVAR_013005 | 144 | Q → R2 PublicationsCorresponds to variant dbSNP:rs1046668Ensembl. | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | M31165 mRNA Translation: AAB00792.1 AJ421518 mRNA Translation: CAD13434.1 AJ419936 mRNA Translation: CAD12353.1 AC009311 Genomic DNA Translation: AAY15067.1 CH471058 Genomic DNA Translation: EAX11511.1 BC030205 mRNA Translation: AAH30205.1 |
CCDSi | CCDS2193.1 |
PIRi | A41735 |
RefSeqi | NP_009046.2, NM_007115.3 |
Genome annotation databases
Ensembli | ENST00000243347; ENSP00000243347; ENSG00000123610 |
GeneIDi | 7130 |
KEGGi | hsa:7130 |
UCSCi | uc002txk.3 human |
Keywords - Coding sequence diversityi
PolymorphismSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | M31165 mRNA Translation: AAB00792.1 AJ421518 mRNA Translation: CAD13434.1 AJ419936 mRNA Translation: CAD12353.1 AC009311 Genomic DNA Translation: AAY15067.1 CH471058 Genomic DNA Translation: EAX11511.1 BC030205 mRNA Translation: AAH30205.1 |
CCDSi | CCDS2193.1 |
PIRi | A41735 |
RefSeqi | NP_009046.2, NM_007115.3 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1O7B | NMR | - | T | 36-133 | [»] | |
1O7C | NMR | - | T | 36-133 | [»] | |
2N40 | NMR | - | A | 36-133 | [»] | |
2PF5 | X-ray | 1.90 | A/B/C/D/E | 36-133 | [»] | |
2WNO | X-ray | 2.30 | A | 129-277 | [»] | |
SMRi | P98066 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
BioGridi | 112984, 22 interactors |
IntActi | P98066, 25 interactors |
STRINGi | 9606.ENSP00000243347 |
Chemistry databases
DrugBanki | DB00945 Acetylsalicylic acid DB08818 Hyaluronic acid |
PTM databases
iPTMneti | P98066 |
PhosphoSitePlusi | P98066 |
Polymorphism and mutation databases
BioMutai | TNFAIP6 |
DMDMi | 68067717 |
Proteomic databases
MassIVEi | P98066 |
PaxDbi | P98066 |
PeptideAtlasi | P98066 |
PRIDEi | P98066 |
ProteomicsDBi | 57783 |
Protocols and materials databases
DNASUi | 7130 |
Genome annotation databases
Ensembli | ENST00000243347; ENSP00000243347; ENSG00000123610 |
GeneIDi | 7130 |
KEGGi | hsa:7130 |
UCSCi | uc002txk.3 human |
Organism-specific databases
CTDi | 7130 |
DisGeNETi | 7130 |
GeneCardsi | TNFAIP6 |
HGNCi | HGNC:11898 TNFAIP6 |
HPAi | CAB032719 HPA050884 |
MIMi | 600410 gene |
neXtProti | NX_P98066 |
OpenTargetsi | ENSG00000123610 |
PharmGKBi | PA36595 |
GenAtlasi | Search... |
Phylogenomic databases
eggNOGi | KOG1218 Eukaryota KOG3714 Eukaryota ENOG410ZI1H LUCA |
GeneTreei | ENSGT00940000157201 |
HOGENOMi | HOG000043074 |
InParanoidi | P98066 |
KOi | K19018 |
OMAi | AGRFCGD |
OrthoDBi | 934805at2759 |
PhylomeDBi | P98066 |
TreeFami | TF334173 |
Enzyme and pathway databases
Reactomei | R-HSA-6798695 Neutrophil degranulation |
SIGNORi | P98066 |
Miscellaneous databases
ChiTaRSi | TNFAIP6 human |
EvolutionaryTracei | P98066 |
GeneWikii | TSG-6 |
GenomeRNAii | 7130 |
Pharosi | P98066 |
PROi | PR:P98066 |
SOURCEi | Search... |
Gene expression databases
Bgeei | ENSG00000123610 Expressed in 178 organ(s), highest expression level in layer of synovial tissue |
Genevisiblei | P98066 HS |
Family and domain databases
CDDi | cd00041 CUB, 1 hit |
Gene3Di | 2.60.120.290, 1 hit 3.10.100.10, 1 hit |
InterProi | View protein in InterPro IPR016186 C-type_lectin-like/link_sf IPR016187 CTDL_fold IPR000859 CUB_dom IPR000538 Link_dom IPR035914 Sperma_CUB_dom_sf |
Pfami | View protein in Pfam PF00431 CUB, 1 hit PF00193 Xlink, 1 hit |
PRINTSi | PR01265 LINKMODULE |
SMARTi | View protein in SMART SM00042 CUB, 1 hit SM00445 LINK, 1 hit |
SUPFAMi | SSF49854 SSF49854, 1 hit SSF56436 SSF56436, 1 hit |
PROSITEi | View protein in PROSITE PS01180 CUB, 1 hit PS01241 LINK_1, 1 hit PS50963 LINK_2, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | TSG6_HUMAN | |
Accessioni | P98066Primary (citable) accession number: P98066 Secondary accession number(s): Q53TI7, Q8WWI9 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | February 1, 1996 |
Last sequence update: | June 21, 2005 | |
Last modified: | October 16, 2019 | |
This is version 176 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Chordata Protein Annotation Program | |
Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. |
Miscellaneousi
Keywords - Technical termi
3D-structure, Complete proteome, Direct protein sequencing, Reference proteomeDocuments
- Human entries with polymorphisms or disease mutations
List of human entries with polymorphisms or disease mutations - Human chromosome 2
Human chromosome 2: entries, gene names and cross-references to MIM - Human polymorphisms and disease mutations
Index of human polymorphisms and disease mutations - MIM cross-references
Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot - PDB cross-references
Index of Protein Data Bank (PDB) cross-references