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Entry version 106 (13 Nov 2019)
Sequence version 1 (01 Nov 1996)
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Protein
Submitted name:

Helix-turn-helix domain-containing protein

Gene

virE spvE

Organism
Salmonella typhimurium
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Helix-turn-helix domain-containing proteinImported
Submitted name:
Putative transposaseImported
Submitted name:
TransposaseImported
Submitted name:
VirE SpvEImported
Submitted name:
Virulence proteinImported
Submitted name:
Virulence protein VsdFImported
Submitted name:
VsdFImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:virE spvEImported
Synonyms:vsdFImported
ORF Names:AAP89_19330Imported, ABO94_23320Imported, AF480_26740Imported, AF488_25105Imported, AIC76_23095Imported, AXR84_19630Imported, AXU58_24475Imported, CD48_23495Imported, CE87_23410Imported, CET98_21115Imported, DJ388_25095Imported, ERS450001_04960Imported, F0A02_20135Imported, F0A03_07500Imported, F0A05_00575Imported, FKA80_18235Imported, FKA82_18100Imported, FKA83_13780Imported, FKA84_11855Imported, FKA85_23115Imported, FKA86_17610Imported, FKA87_23285Imported, FKA88_18915Imported, FKA89_08390Imported, FKA90_23220Imported, FKA92_19315Imported, FKA93_19100Imported, FKA94_15650Imported, FKA95_19085Imported, FKA96_19155Imported, FKA97_18655Imported, FKA98_20125Imported, FKA99_19555Imported, FKB00_19150Imported, FKB01_18225Imported, FKB02_18720Imported, FKB03_19155Imported, FKB12_21845Imported, FKB15_18935Imported, FKB19_15990Imported, FYL57_14205Imported, FYL84_09525Imported, FYL94_03475Imported, FZ993_12405Imported, FZ999_11070Imported, GW08_23790Imported, JO10_23895Imported, NCTC13348_01333Imported, NG18_23585Imported, p6919o084Imported, p8934bo083Imported, QB40_19465Imported, QD15_14510Imported, RJ78_25580Imported, SAMEA4398682_05102Imported, YI33_24975Imported, YR17_20355Imported, ZB89_17110Imported, ZC54_17395Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid 5Imported
Plasmid pSBLTImported
Plasmid pSTV-Mu1Imported
Plasmid pSal6919aImported
Plasmid pSal8934bImported
Plasmid pYT1Imported
Plasmid pYT2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSalmonella typhimuriumImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri90371 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeSalmonella

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1 – 45HTH_OrfB_IS605InterPro annotationAdd BLAST45

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR021027 Transposase_put_HTH

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF12323 HTH_OrfB_IS605, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q56125-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLRATKVCIY PTPEQAEHLN AQFGAVRFVY SKSLHIKKHA YQRHGVSLTP
60 70 80 90 100
RKDIKPLLAV AKKFRKFRKY AWLKEYDSIA LQQAVINLDV AFSNCFNPKL
110
KARFPMFKRK HGKLLG
Length:116
Mass (Da):13,502
Last modified:November 1, 1996 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i9AB1949EAF7EE8A0
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
JF274991 Genomic DNA Translation: AEX00771.1
JF274992 Genomic DNA Translation: AEX00912.1
KX777254 Genomic DNA Translation: AOZ60986.1
AB576781 Genomic DNA Translation: BAJ15335.1
AB605179 Genomic DNA Translation: BAL48693.1
Z11561 Genomic DNA Translation: CAA77654.1
LN794247 Genomic DNA Translation: CEO37090.1
LN829405 Genomic DNA Translation: CKI21885.1
AAAALU010000091 Genomic DNA Translation: EAA1162146.1
AAABXQ010000029 Genomic DNA Translation: EAA5770941.1
AAACDS010000018 Genomic DNA Translation: EAA6486606.1
AAACKB010000018 Genomic DNA Translation: EAA7216780.1
AAACKA010000037 Genomic DNA Translation: EAA7298050.1
AAACLH010000056 Genomic DNA Translation: EAA7450585.1
AAACMS010000029 Genomic DNA Translation: EAA7667974.1
AAACOB010000028 Genomic DNA Translation: EAA7813696.1
AAACPZ010000035 Genomic DNA Translation: EAA8003219.1
AAACSV010000025 Genomic DNA Translation: EAA8349019.1
AAACUH010000030 Genomic DNA Translation: EAA8508602.1
AAACTG010000044 Genomic DNA Translation: EAA8550795.1
AAACXJ010000024 Genomic DNA Translation: EAA8929147.1
AAADEE010000028 Genomic DNA Translation: EAA9727655.1
AAAFEY010000015 Genomic DNA Translation: EAB6023176.1
AAAFRV010000053 Genomic DNA Translation: EAB7515121.1
AAAFZS010000052 Genomic DNA Translation: EAB8562730.1
AAAGPP010000026 Genomic DNA Translation: EAC0511091.1
AAAGQC010000018 Genomic DNA Translation: EAC0528973.1
AAAGUK010000027 Genomic DNA Translation: EAC1019596.1
AAAGVF010000013 Genomic DNA Translation: EAC1146569.1
VHLQ01000015 Genomic DNA Translation: KAA0280245.1
VHLU01000015 Genomic DNA Translation: KAA0287926.1
VHLX01000025 Genomic DNA Translation: KAA0322614.1
VHMG01000014 Genomic DNA Translation: KAA0336673.1
VHML01000024 Genomic DNA Translation: KAA0353760.1
VHMK01000014 Genomic DNA Translation: KAA0353824.1
VHMM01000015 Genomic DNA Translation: KAA0362778.1
VHMJ01000015 Genomic DNA Translation: KAA0364833.1
VHMI01000014 Genomic DNA Translation: KAA0366509.1
VHMH01000014 Genomic DNA Translation: KAA0376383.1
VHMO01000014 Genomic DNA Translation: KAA0377865.1
VHMP01000014 Genomic DNA Translation: KAA0383321.1
VHMQ01000015 Genomic DNA Translation: KAA0390778.1
VHMN01000014 Genomic DNA Translation: KAA0391149.1
VHMR01000015 Genomic DNA Translation: KAA0393178.1
VHMV01000014 Genomic DNA Translation: KAA0404947.1
VHMX01000017 Genomic DNA Translation: KAA0405743.1
VHMW01000057 Genomic DNA Translation: KAA0417399.1
VHMY01000057 Genomic DNA Translation: KAA0424587.1
VHMU01000020 Genomic DNA Translation: KAA0424910.1
VHNA01000016 Genomic DNA Translation: KAA0433519.1
VHMT01000050 Genomic DNA Translation: KAA0437355.1
VHMZ01000013 Genomic DNA Translation: KAA0438726.1
VHNB01000014 Genomic DNA Translation: KAA0451496.1
VHND01000015 Genomic DNA Translation: KAA0459894.1
VSXC01000013 Genomic DNA Translation: TYM89486.1
VSXL01000048 Genomic DNA Translation: TYN22433.1
VSXJ01000065 Genomic DNA Translation: TYN30323.1
VTSA01000032 Genomic DNA Translation: TZF39305.1
VTRZ01000049 Genomic DNA Translation: TZF44238.1
VTSB01000062 Genomic DNA Translation: TZF57124.1
VTSL01000178 Genomic DNA Translation: TZG09937.1
VTSM01000002 Genomic DNA Translation: TZG39689.1
CAADIU010000007 Genomic DNA Translation: VFS15452.1
CABIII010000003 Genomic DNA Translation: VUZ13044.1

NCBI Reference Sequences

More...
RefSeqi
WP_001541541.1, NZ_VKKR01000017.1
YP_003264389.1, NC_013437.1
YP_003864186.1, NC_014476.2
YP_006955270.1, NC_019108.1
YP_006955410.1, NC_019109.1
YP_006955572.1, NC_019001.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
13910348
13910559
13912910
40104960
8541921
9725207

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
seni:CY43_24145

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|90371.1185.peg.5027

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JF274991 Genomic DNA Translation: AEX00771.1
JF274992 Genomic DNA Translation: AEX00912.1
KX777254 Genomic DNA Translation: AOZ60986.1
AB576781 Genomic DNA Translation: BAJ15335.1
AB605179 Genomic DNA Translation: BAL48693.1
Z11561 Genomic DNA Translation: CAA77654.1
LN794247 Genomic DNA Translation: CEO37090.1
LN829405 Genomic DNA Translation: CKI21885.1
AAAALU010000091 Genomic DNA Translation: EAA1162146.1
AAABXQ010000029 Genomic DNA Translation: EAA5770941.1
AAACDS010000018 Genomic DNA Translation: EAA6486606.1
AAACKB010000018 Genomic DNA Translation: EAA7216780.1
AAACKA010000037 Genomic DNA Translation: EAA7298050.1
AAACLH010000056 Genomic DNA Translation: EAA7450585.1
AAACMS010000029 Genomic DNA Translation: EAA7667974.1
AAACOB010000028 Genomic DNA Translation: EAA7813696.1
AAACPZ010000035 Genomic DNA Translation: EAA8003219.1
AAACSV010000025 Genomic DNA Translation: EAA8349019.1
AAACUH010000030 Genomic DNA Translation: EAA8508602.1
AAACTG010000044 Genomic DNA Translation: EAA8550795.1
AAACXJ010000024 Genomic DNA Translation: EAA8929147.1
AAADEE010000028 Genomic DNA Translation: EAA9727655.1
AAAFEY010000015 Genomic DNA Translation: EAB6023176.1
AAAFRV010000053 Genomic DNA Translation: EAB7515121.1
AAAFZS010000052 Genomic DNA Translation: EAB8562730.1
AAAGPP010000026 Genomic DNA Translation: EAC0511091.1
AAAGQC010000018 Genomic DNA Translation: EAC0528973.1
AAAGUK010000027 Genomic DNA Translation: EAC1019596.1
AAAGVF010000013 Genomic DNA Translation: EAC1146569.1
VHLQ01000015 Genomic DNA Translation: KAA0280245.1
VHLU01000015 Genomic DNA Translation: KAA0287926.1
VHLX01000025 Genomic DNA Translation: KAA0322614.1
VHMG01000014 Genomic DNA Translation: KAA0336673.1
VHML01000024 Genomic DNA Translation: KAA0353760.1
VHMK01000014 Genomic DNA Translation: KAA0353824.1
VHMM01000015 Genomic DNA Translation: KAA0362778.1
VHMJ01000015 Genomic DNA Translation: KAA0364833.1
VHMI01000014 Genomic DNA Translation: KAA0366509.1
VHMH01000014 Genomic DNA Translation: KAA0376383.1
VHMO01000014 Genomic DNA Translation: KAA0377865.1
VHMP01000014 Genomic DNA Translation: KAA0383321.1
VHMQ01000015 Genomic DNA Translation: KAA0390778.1
VHMN01000014 Genomic DNA Translation: KAA0391149.1
VHMR01000015 Genomic DNA Translation: KAA0393178.1
VHMV01000014 Genomic DNA Translation: KAA0404947.1
VHMX01000017 Genomic DNA Translation: KAA0405743.1
VHMW01000057 Genomic DNA Translation: KAA0417399.1
VHMY01000057 Genomic DNA Translation: KAA0424587.1
VHMU01000020 Genomic DNA Translation: KAA0424910.1
VHNA01000016 Genomic DNA Translation: KAA0433519.1
VHMT01000050 Genomic DNA Translation: KAA0437355.1
VHMZ01000013 Genomic DNA Translation: KAA0438726.1
VHNB01000014 Genomic DNA Translation: KAA0451496.1
VHND01000015 Genomic DNA Translation: KAA0459894.1
VSXC01000013 Genomic DNA Translation: TYM89486.1
VSXL01000048 Genomic DNA Translation: TYN22433.1
VSXJ01000065 Genomic DNA Translation: TYN30323.1
VTSA01000032 Genomic DNA Translation: TZF39305.1
VTRZ01000049 Genomic DNA Translation: TZF44238.1
VTSB01000062 Genomic DNA Translation: TZF57124.1
VTSL01000178 Genomic DNA Translation: TZG09937.1
VTSM01000002 Genomic DNA Translation: TZG39689.1
CAADIU010000007 Genomic DNA Translation: VFS15452.1
CABIII010000003 Genomic DNA Translation: VUZ13044.1
RefSeqiWP_001541541.1, NZ_VKKR01000017.1
YP_003264389.1, NC_013437.1
YP_003864186.1, NC_014476.2
YP_006955270.1, NC_019108.1
YP_006955410.1, NC_019109.1
YP_006955572.1, NC_019001.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

GeneIDi13910348
13910559
13912910
40104960
8541921
9725207
KEGGiseni:CY43_24145
PATRICifig|90371.1185.peg.5027

Family and domain databases

InterProiView protein in InterPro
IPR021027 Transposase_put_HTH
PfamiView protein in Pfam
PF12323 HTH_OrfB_IS605, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ56125_SALTM
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q56125
Secondary accession number(s): F1SVE6, Q7DAP7
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 13, 2019
This is version 106 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

PlasmidImported
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