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http://purl.uniprot.org/citations/26186291http://www.w3.org/1999/02/22-rdf-syntax-ns#typehttp://purl.uniprot.org/core/Journal_Citation
http://purl.uniprot.org/citations/26186291http://www.w3.org/2000/01/rdf-schema#comment"Notwithstanding numerous published structures of RNA Polymerase II (Pol II), structural details of Pol II engaging a complete nucleic acid scaffold have been lacking. Here, we report the structures of TFIIF-stabilized transcribing Pol II complexes, revealing the upstream duplex and full transcription bubble. The upstream duplex lies over a wedge-shaped loop from Rpb2 that engages its minor groove, providing part of the structural framework for DNA tracking during elongation. At the upstream transcription bubble fork, rudder and fork loop 1 residues spatially coordinate strand annealing and the nascent RNA transcript. At the downstream fork, a network of Pol II interactions with the non-template strand forms a rigid domain with the trigger loop (TL), allowing visualization of its open state. Overall, our observations suggest that "open/closed" conformational transitions of the TL may be linked to interactions with the non-template strand, possibly in a synchronized ratcheting manner conducive to polymerase translocation."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.org/dc/terms/identifier"doi:10.1016/j.molcel.2015.06.034"xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/author"Graham B.W."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/author"Zhang Q."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/author"Trakselis M.A."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/author"Calero M."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/author"Lin G."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/author"Kaplan C.D."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/author"Spahr H."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/author"Calero G."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/author"Cohen A.E."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/author"Barnes C.O."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/author"Malik I."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/author"Pullara F."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/author"Brown I.S."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/date"2015"xsd:gYear
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/name"Mol Cell"xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/pages"258-269"xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/title"Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble."xsd:string
http://purl.uniprot.org/citations/26186291http://purl.uniprot.org/core/volume"59"xsd:string
http://purl.uniprot.org/citations/26186291http://www.w3.org/2004/02/skos/core#exactMatchhttp://purl.uniprot.org/pubmed/26186291
http://purl.uniprot.org/citations/26186291http://xmlns.com/foaf/0.1/primaryTopicOfhttps://pubmed.ncbi.nlm.nih.gov/26186291
http://purl.uniprot.org/uniprot/#_P41895-mappedCitation-26186291http://www.w3.org/1999/02/22-rdf-syntax-ns#objecthttp://purl.uniprot.org/citations/26186291
http://purl.uniprot.org/uniprot/#_P27999-mappedCitation-26186291http://www.w3.org/1999/02/22-rdf-syntax-ns#objecthttp://purl.uniprot.org/citations/26186291