Results

RDF/XMLNTriplesTurtleShow queryShare
SubjectPredicateObject
http://purl.uniprot.org/citations/29698501http://www.w3.org/1999/02/22-rdf-syntax-ns#typehttp://purl.uniprot.org/core/Journal_Citation
http://purl.uniprot.org/citations/29698501http://www.w3.org/2000/01/rdf-schema#comment"

Background

Raynaud's phenomenon (RP) describes the phenomenon of recurrent vasospasm of digital arteries, associated with skin colour changes: pallor, cyanosis and erythema. Twin studies have indicated a genetic predisposition for RP; however, the precise aetiology of RP remains unknown. It is thought that genetic variation in temperature-responsive or vasospastic genes might underlie RP so performed a candidate gene study in a large, population based sample. We assessed the association between RP and single nucleotide polymorphisms (SNPs) in the TRPA1, TRPM8, CALCA, CALCB and NOS1 genes.

Methods

Analysis included a total of 4276 individuals from the TwinsUK database. RP status had been determined using validated, self-administered questionnaires and was diagnosed in 640 individuals (17.6%). 66 tag SNPs across the candidate genes were tested for association with RP status using a linear regression model, accounting for covariates. Adjustment was made for multiple testing. RegulomeDB and GTEx databases were used to assess possible functional effects of the polymorphisms.

Results

Nominally significant associations between RP and four SNPs in NOS1 and one in CALCB were identified. After permutation testing, rs527590 SNP in NOS1 passed the significance threshold. RegulomeDB scores indicated an unlikely functional effect of this variant, while the survey of the GTEx database found the SNP and several variants in linkage disequilibrium to be cis-eQTLs in skin.

Conclusion

Results indicate that RP is associated with variation in gene NOS1. This finding may be related to the observation that the significant SNP in NOS1 is known to exhibit functional influence on the gene expression."xsd:string
http://purl.uniprot.org/citations/29698501http://purl.org/dc/terms/identifier"doi:10.1371/journal.pone.0196279"xsd:string
http://purl.uniprot.org/citations/29698501http://purl.uniprot.org/core/author"Munir S."xsd:string
http://purl.uniprot.org/citations/29698501http://purl.uniprot.org/core/author"Freidin M.B."xsd:string
http://purl.uniprot.org/citations/29698501http://purl.uniprot.org/core/author"Brain S."xsd:string
http://purl.uniprot.org/citations/29698501http://purl.uniprot.org/core/author"Williams F.M.K."xsd:string
http://purl.uniprot.org/citations/29698501http://purl.uniprot.org/core/date"2018"xsd:gYear
http://purl.uniprot.org/citations/29698501http://purl.uniprot.org/core/name"PLoS One"xsd:string
http://purl.uniprot.org/citations/29698501http://purl.uniprot.org/core/pages"e0196279"xsd:string
http://purl.uniprot.org/citations/29698501http://purl.uniprot.org/core/title"Association of Raynaud's phenomenon with a polymorphism in the NOS1 gene."xsd:string
http://purl.uniprot.org/citations/29698501http://purl.uniprot.org/core/volume"13"xsd:string
http://purl.uniprot.org/citations/29698501http://www.w3.org/2004/02/skos/core#exactMatchhttp://purl.uniprot.org/pubmed/29698501
http://purl.uniprot.org/citations/29698501http://xmlns.com/foaf/0.1/primaryTopicOfhttps://pubmed.ncbi.nlm.nih.gov/29698501
http://purl.uniprot.org/uniprot/#_A0PJJ7-mappedCitation-29698501http://www.w3.org/1999/02/22-rdf-syntax-ns#objecthttp://purl.uniprot.org/citations/29698501
http://purl.uniprot.org/uniprot/#_B4DG68-mappedCitation-29698501http://www.w3.org/1999/02/22-rdf-syntax-ns#objecthttp://purl.uniprot.org/citations/29698501
http://purl.uniprot.org/uniprot/#_B3VK56-mappedCitation-29698501http://www.w3.org/1999/02/22-rdf-syntax-ns#objecthttp://purl.uniprot.org/citations/29698501
http://purl.uniprot.org/uniprot/#_P29475-mappedCitation-29698501http://www.w3.org/1999/02/22-rdf-syntax-ns#objecthttp://purl.uniprot.org/citations/29698501
http://purl.uniprot.org/uniprot/#_L8E6X1-mappedCitation-29698501http://www.w3.org/1999/02/22-rdf-syntax-ns#objecthttp://purl.uniprot.org/citations/29698501
http://purl.uniprot.org/uniprot/P29475http://purl.uniprot.org/core/mappedCitationhttp://purl.uniprot.org/citations/29698501
http://purl.uniprot.org/uniprot/A0PJJ7http://purl.uniprot.org/core/mappedCitationhttp://purl.uniprot.org/citations/29698501
http://purl.uniprot.org/uniprot/B4DG68http://purl.uniprot.org/core/mappedCitationhttp://purl.uniprot.org/citations/29698501
http://purl.uniprot.org/uniprot/B3VK56http://purl.uniprot.org/core/mappedCitationhttp://purl.uniprot.org/citations/29698501
http://purl.uniprot.org/uniprot/L8E6X1http://purl.uniprot.org/core/mappedCitationhttp://purl.uniprot.org/citations/29698501