http://purl.uniprot.org/citations/31307060 | http://www.w3.org/1999/02/22-rdf-syntax-ns#type | http://purl.uniprot.org/core/Journal_Citation |
http://purl.uniprot.org/citations/31307060 | http://www.w3.org/1999/02/22-rdf-syntax-ns#type | http://purl.uniprot.org/core/Journal_Citation |
http://purl.uniprot.org/citations/31307060 | http://www.w3.org/1999/02/22-rdf-syntax-ns#type | http://purl.uniprot.org/core/Journal_Citation |
http://purl.uniprot.org/citations/31307060 | http://www.w3.org/2000/01/rdf-schema#comment | "BackgroundAcer yangbiense is a newly described critically endangered endemic maple tree confined to Yangbi County in Yunnan Province in Southwest China. It was included in a programme for rescuing the most threatened species in China, focusing on "plant species with extremely small populations (PSESP)".FindingsWe generated 64, 94, and 110 Gb of raw DNA sequences and obtained a chromosome-level genome assembly of A. yangbiense through a combination of Pacific Biosciences Single-molecule Real-time, Illumina HiSeq X, and Hi-C mapping, respectively. The final genome assembly is ∼666 Mb, with 13 chromosomes covering ∼97% of the genome and scaffold N50 sizes of 45 Mb. Further, BUSCO analysis recovered 95.5% complete BUSCO genes. The total number of repetitive elements account for 68.0% of the A. yangbiense genome. Genome annotation generated 28,320 protein-coding genes, assisted by a combination of prediction and transcriptome sequencing. In addition, a nearly 1:1 orthology ratio of dot plots of longer syntenic blocks revealed a similar evolutionary history between A. yangbiense and grape, indicating that the genome has not undergone a whole-genome duplication event after the core eudicot common hexaploidization.ConclusionHere, we report a high-quality de novo genome assembly of A. yangbiense, the first genome for the genus Acer and the family Aceraceae. This will provide fundamental conservation genomics resources, as well as representing a new high-quality reference genome for the economically important Acer lineage and the wider order of Sapindales."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.org/dc/terms/identifier | "doi:10.1093/gigascience/giz085"xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.org/dc/terms/identifier | "doi:10.1093/gigascience/giz085"xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.org/dc/terms/identifier | "doi:10.1093/gigascience/giz085"xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Guo H."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Guo H."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Guo H."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Luo G."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Luo G."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Luo G."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Sun W."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Sun W."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Sun W."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Ma Y."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Ma Y."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Ma Y."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Tao L."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Tao L."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Tao L."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Yang J."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Yang J."xsd:string |
http://purl.uniprot.org/citations/31307060 | http://purl.uniprot.org/core/author | "Yang J."xsd:string |