| http://purl.uniprot.org/proteomes/UP000000247 | http://www.w3.org/1999/02/22-rdf-syntax-ns#type | http://purl.uniprot.org/core/Proteome |
| http://purl.uniprot.org/proteomes/UP000000247 | http://www.w3.org/1999/02/22-rdf-syntax-ns#type | http://purl.uniprot.org/core/Representative_Proteome |
| http://purl.uniprot.org/proteomes/UP000000247 | http://www.w3.org/2000/01/rdf-schema#comment | "Vesicomyosocius okutanii is the thioautotrophic symbiont of the deep-sea clam Calyptogena okutanii. It harbors a single circular chromosome of 1.02 Mb with a GC content of 31.6 percent. It is the smallest genome reported so far in autotrophic bacteria. Apart from the protein-coding genes, it encodes a single ribosomal RNA operon and 35 tRNA genes specifying all 20 amino acids. Genes essential for cytokinesis, most genes for DNA recombination and for the SOS system, genes for flagellum or related secretory systems are missing. It possesses only two RNA-polymerase sigma factors for housekeeping and stress-induced transcriptions. It has only two two-component systems. It has gene sets for glycolysis and the pentose phosphate cycle but lacks some genes in the TCA cycle. Genes for the biosynthesis of various cofactors, fatty acids and nucleotides are present. Vesicomyosocius okutanii lives in the gill epithelial cells of the clam which has only a vestigial digestive tract and therefore nutritionally depends on its symbiont. The symbiont is thus thought to supply amino acids, cofactor and other nutrients to its host. However, genes for exporting these nutrients to the host have not been found. It suggests that the symbiont could be digested in bacteriocytes and the released nutrients absorbed by the host."xsd:string |
| http://purl.uniprot.org/proteomes/UP000000247 | http://www.w3.org/2000/01/rdf-schema#seeAlso | http://purl.uniprot.org/proteomes/UP000000247#assembly |
| http://purl.uniprot.org/proteomes/UP000000247 | http://www.w3.org/2000/01/rdf-schema#seeAlso | http://purl.uniprot.org/proteomes/UP000000247#source |
| http://purl.uniprot.org/proteomes/UP000000247 | http://purl.uniprot.org/core/organism | http://purl.uniprot.org/taxonomy/412965 |
| http://purl.uniprot.org/proteomes/UP000000247 | http://purl.uniprot.org/core/citation | http://purl.uniprot.org/citations/17493812 |
| http://purl.uniprot.org/proteomes/UP000000247 | http://www.w3.org/2004/02/skos/core#closeMatch | http://purl.uniprot.org/proteomes/UP000000247#cpd |
| http://purl.uniprot.org/proteomes/UP000000247 | http://purl.org/dc/terms/modified | "2023-11-20"xsd:date |
| http://purl.uniprot.org/proteomes/UP000000247 | http://www.w3.org/2004/02/skos/core#narrower | http://purl.uniprot.org/proteomes/UP000000247#Chromosome |
| http://purl.uniprot.org/proteomes/UP000000247 | http://busco.ezlab.org/schema#has_score | http://purl.uniprot.org/proteomes/UP000000247#busco |
| http://purl.uniprot.org/proteomes/UP000000247 | http://purl.uniprot.org/core/panproteome | http://purl.uniprot.org/proteomes/UP000000247 |
| http://purl.uniprot.org/proteomes/UP000000247 | http://purl.uniprot.org/core/strain | http://purl.uniprot.org/proteomes/UP000000247#HA |
| http://purl.uniprot.org/uniprot/A5CVU1#attribution-0A5D2B83D74A5F394AD42AA25F01E159 | http://purl.uniprot.org/core/source | http://purl.uniprot.org/proteomes/UP000000247 |
| http://purl.uniprot.org/uniprot/A5CVG3#attribution-0A5D2B83D74A5F394AD42AA25F01E159 | http://purl.uniprot.org/core/source | http://purl.uniprot.org/proteomes/UP000000247 |
| http://purl.uniprot.org/uniprot/A5CWN1#attribution-0A5D2B83D74A5F394AD42AA25F01E159 | http://purl.uniprot.org/core/source | http://purl.uniprot.org/proteomes/UP000000247 |
| http://purl.uniprot.org/uniprot/A5CWD0#attribution-0A5D2B83D74A5F394AD42AA25F01E159 | http://purl.uniprot.org/core/source | http://purl.uniprot.org/proteomes/UP000000247 |
| http://purl.uniprot.org/uniprot/A5CWR8#attribution-0A5D2B83D74A5F394AD42AA25F01E159 | http://purl.uniprot.org/core/source | http://purl.uniprot.org/proteomes/UP000000247 |
| http://purl.uniprot.org/uniprot/A5CWC6#attribution-0A5D2B83D74A5F394AD42AA25F01E159 | http://purl.uniprot.org/core/source | http://purl.uniprot.org/proteomes/UP000000247 |
| http://purl.uniprot.org/uniprot/A5CVJ9#attribution-0A5D2B83D74A5F394AD42AA25F01E159 | http://purl.uniprot.org/core/source | http://purl.uniprot.org/proteomes/UP000000247 |
| http://purl.uniprot.org/uniprot/A5CW89#attribution-0A5D2B83D74A5F394AD42AA25F01E159 | http://purl.uniprot.org/core/source | http://purl.uniprot.org/proteomes/UP000000247 |
| http://purl.uniprot.org/uniprot/A5CWN4#attribution-0A5D2B83D74A5F394AD42AA25F01E159 | http://purl.uniprot.org/core/source | http://purl.uniprot.org/proteomes/UP000000247 |
| http://purl.uniprot.org/uniprot/A5CWX8#attribution-0A5D2B83D74A5F394AD42AA25F01E159 | http://purl.uniprot.org/core/source | http://purl.uniprot.org/proteomes/UP000000247 |
| http://purl.uniprot.org/uniprot/A5CXH4#attribution-0A5D2B83D74A5F394AD42AA25F01E159 | http://purl.uniprot.org/core/source | http://purl.uniprot.org/proteomes/UP000000247 |
| http://purl.uniprot.org/uniprot/A5CWY2#attribution-0A5D2B83D74A5F394AD42AA25F01E159 | http://purl.uniprot.org/core/source | http://purl.uniprot.org/proteomes/UP000000247 |